Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4 102 3e-16 seq3 84.2 9e-11 >seq4 Length=1514682 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||||| || || |||||||| || || || || Sbjct 88910 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 88851 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || || || ||||||||||| || || || || || Sbjct 88850 GACACCATCGATAACGTCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCAG 88791 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || || | || ||||| ||||| | | || || || Sbjct 88790 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAAC 88731 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | ||||| ||||| || | ||||| ||||| Sbjct 88730 ATCCAGAAGGAATCTACACTCCACTTGGTCCTTAGACTTAGAGG 88687 Score = 102 bits (112), Expect = 3e-16 Identities = 171/246 (70%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 391028 AGAAACAATATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTAT 391087 |||| |||| || ||| || ||| | || ||||| || || || || ||||| || || Sbjct 89615 AGAACCAAT-TAGTATTAAATCATGCAGATCTTCGTCAAGACCCTCACAGGTAAGACCAT 89557 Query 391088 TACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAA 391147 || || || ||||| || || || | |||||| | || ||||| || || ||||| Sbjct 89556 CACACTCGAGGTTGAGTCCTCAGACACCATTGACAACGTCAAGCAAAAGATCCAGGATAA 89497 Query 391148 GGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| || || || || || |||||| | || || | || || || | || ||||| Sbjct 89496 GGAAGGTATCCCACCAGACCAGCAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGG 89437 Query 391208 AAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | | ||||| || || | ||||| | || || ||||| || | ||| | Sbjct 89436 CAGAACCCTTTCCGATTACAACATCCAAAAGGAGTCTACGCTCCACTTGGTTCTCAGATT 89377 Query 391268 GAGAGG 391273 |||||| Sbjct 89376 GAGAGG 89371 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| ||||| || || || || || || || || || Sbjct 1333429 ATGCAGATTTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1333488 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || || ||||| ||||||||||| || || Sbjct 1333489 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGAATTCCTCCAGACCAG 1333548 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || || || || || |||||| | | || || || Sbjct 1333549 CAGAGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAAC 1333608 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || || ||||| || | ||||||||||| Sbjct 1333609 ATTCAGAAGGAGTCCACCCTCCACTTGGTCCTTAGACTGAGAGG 1333652 Score = 98.7 bits (108), Expect = 4e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || |||||||| ||||| || || || || ||||| || Sbjct 89138 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACGCTCGAGGTCGAATCTTCG 89079 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || || |||||||||||||| || || || || || Sbjct 89078 GACACCATTGACAATGTCAAGCAGAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAG 89019 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || || | || ||||| | || | | || || || Sbjct 89018 CAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGGACCCTTTCTGACTACAAC 88959 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || || ||||| || | ||| ||||||| Sbjct 88958 ATTCAGAAAGAATCCACTCTCCACTTGGTTCTCAGATTGAGAGG 88915 >seq3 Length=1705961 Score = 84.2 bits (92), Expect = 9e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || || || || || || || || || ||||| || || Sbjct 1462630 ATGCAGATTTTCGTTAAAACCCTTACCGGAAAGACGATCACCCTCGAGGTTGAGTCTTCC 1462689 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || || ||||| ||||| || ||||| || Sbjct 1462690 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAG 1462749 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || | || || || | || | |||| || || Sbjct 1462750 CAGAGACTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTTCGGACTACAAC 1462809 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||||| || | ||||||||||| Sbjct 1462810 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCTGAGACTGAGAGG 1462853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718020291620