Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 seq4 100 4e-16 seq2 82.4 9e-11 >seq1 Length=2842153 Score = 244 bits (270), Expect = 1e-59 Identities = 1122/1758 (64%), Gaps = 59/1758 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| | || || || ||| |||| ||| | ||||| || Sbjct 870321 CCTCAGCACATGATCATGAGAGTTGCCATTGGTGTCCACTCGGACAACATTGAAAAAGTC 870380 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| || |||| ||||| | ||||| || ||| Sbjct 870381 CTCGAGACTTACAACCTCATGTCGGAGCGTTACTTCACGCACGCTTCGCCAACTCTGTTC 870440 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| ||| | || |||||||| ||| ||| | |||| | |||||||| Sbjct 870441 AACGCCGGTACTCCACGTCCTCAAATGTCGTCTTGCTTCTTGGTTGCCATGAAGGAGGAC 870500 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||| | || || |||| ||| | | | ||||| | ||||| ||| || ||| Sbjct 870501 TCCATCGAAGGTATCTACGATACTTTGAAGCAGTGTGCTCTCATCTCCAAGACCGCCGGT 870560 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || ||||| |||||||||| | || | |||| ||| ||| ||||| || Sbjct 870561 GGAATCGGTTTGCACATCCACAACATCCGTGCCACTGGCTCTTACATTGCCGGTACCAAC 870620 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||| ||||||||| | || || || ||| ||| || || || || Sbjct 870621 GGTACTTCCAACGGTATCATTCCAATGGTCCGTGTCTTCAACAACACGGCCCGTTACGTG 870680 Query 111972 AACCAAGCTGGGCGTCGCAAGGGATCT------ATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||||| ||| | |||| || || ||||| |||| || |||||||||||| Sbjct 870681 GACCAAGGTGG---TAACAAGAGACCTGGTGCCATCGCCATCTACCTCGAGCCATGGCAC 870737 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || ||| | || || || | ||| ||||| ||| | |||||| || | Sbjct 870738 GCTGACATCTTCGACCTCACCGACATCCGTAAAAACCACGGTAAGGAGGAGATCCGTGCC 870797 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || | ||| | || || |||||||| || |||||||||||| | || |||| | Sbjct 870798 CGTGACTTGTTCCCAGCCCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCGAGGCCAAC 870857 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || ||| ||||||| | |||| |||| || ||||| ||||||| | || || Sbjct 870858 TCCACGTGGACTCTCTTCTCTCCATCGGAGGCCCCAGGTCTTTCCGATGTCTACGGAGAC 870917 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265 ||||| ||| |||||| | |||||| || | || | || ||| || ||| Sbjct 870918 GAGTTCGAACGTCTCTACGAGAGATACGAGCGCGAGGGACGTG-GA---AGAC-GTACCA 870972 Query 112266 GC--TGCC--GATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | ||| || | ||||| | || | || | || |||||||||||||| |||| Sbjct 870973 TCAAGGCCCAGAAGCTGTGGTACCACATCTTGGAGGCCCAGACCGAGACTGGTACTCCAT 871032 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||| | ||||| ||||| || |||| ||| || || |||| ||||| |||| Sbjct 871033 TCATGGTCTACAAGGACGCTTGCAACCGCAAGTCCAACCAGCAGAACCTGGGTACCATCA 871092 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || ||||||| | || || | | || | | ||| || || || | Sbjct 871093 AGTCTTCCAACTTGTGCTGTGAGGTTGTTGAGTACTCCTCTCCAGAGGAAGTTGCCGTCT 871152 Query 112441 GTAACCTCGCATCAATC-GCTCTCCCCAAGTATGTGGATCCAGAGA---CAAAGACATTT 112496 ||||| | || || || ||| | || | ||| || | || | | || | || | Sbjct 871153 GTAACTTGGCTTCCGTCTGCT-TGCCAGCCTTTGTCGAGCAGGACAACGCCAACAAATCT 871211 Query 112497 ---------GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 | | ||| || | ||| | | | || | | || ||| | ||| Sbjct 871212 TCCTCTTACAACTTTGAGAAGTTGCACCAGATCATCAAGGTTCTTACTCGTAACTTGAAC 871271 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACA 112606 | || ||||| | || | ||||| ||| ||| ||||| ||||| |||||| | Sbjct 871272 TGTGTCATTGACCGGAACTACTACCCAGTTCCAGA-GGCTCGCCGTTCTAACATGAGAAA 871330 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 112666 | | || ||| ||||||||| |||||| | || || ||| | || || || | | Sbjct 871331 CAGACCTGTTGCTCTCGGTGTGCAAGGTTTGGCCGACACTTTCTTCCTGTGCCGTCTGCC 871390 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 ||| || ||| || || || | ||| | || || ||||| || || ||||| Sbjct 871391 ATTCGACTCCCCAGAGGCCCGTGAGTTGAATATCCAGATCTTCGAGACCATCTACCACGC 871450 Query 112727 CGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 ||| | ||||| || |||||||| | || ||| || || |||| ||||| Sbjct 871451 AGCTTTGGAGGCTTCGTCCGAGTTGGCCACCGAGGAAGGTGTGTACGAGACCTACGAGGG 871510 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTT-CAATTTGATATGTGGG--AAGGTGAGACCAAGC- 112842 || ||||| || |||||| ||| || | ||| |||||| || || |||| | Sbjct 871511 CTCGCCAGCCTC-CAAGGGTATCTTGCAGTACGATCTGTGGGGCAA---GAAGCCAACCG 871566 Query 112843 TTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 || | |||||||| | | |||| ||| ||| || ||| | ||| | Sbjct 871567 ATCTGTGGGACTGGGATGAGTTGAAGGCTAAGATCGCCAAGACCGGACTTAGAAACTCGC 871626 Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962 | ||| |||| ||||||||||| || |||||| | || ||| ||||| | || || |||| Sbjct 871627 TCTTGGTGGCTCCAATGCCAACTGCTTCCACCTCCCAGATCATGGGTTACAACGAGTGCT 871686 Query 112963 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 113022 | || || ||||| | |||||||| | | ||| ||||| || ||||| ||| | Sbjct 871687 TCGAGCCATACACTTCCAACATCTACTCGCGTAGAGTGCTCGCCGGTGAGTTCCAGATCG 871746 Query 113023 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082 ||||| | | | |||| | || |||| ||||| | | | ||||||| Sbjct 871747 TCAACCCTTACATGCTCCGTGACTTGGTCGACCTTGGAATCTGGGACGATGCTATGAAGA 871806 Query 113083 ATCTCAT----GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 | ||| |||| | | ||||| || || | || | ||||||| ||| Sbjct 871807 ACTACATCATCAGTGATAAC----GGTTCGATCCAGCACCTTCCTAACGTTCCAGACGAA 871862 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCC 113198 | |||||| | ||| || || ||||| ||| |||| |||| ||||||||| Sbjct 871863 CTCAAGAAGATCTACAAGACCGTGTGGGAGATCTCCCAAAAGGGAATCATCGACATGGCC 871922 Query 113199 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAG-- 113254 || || | ||| || | |||| | |||| ||| ||||| || || ||| Sbjct 871923 GCCGACAGAGGTGCCTACGTTGACC--AGTCCGAGTCGATGAA--CATCCACCTCAAGTC 871978 Query 113255 TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 113314 |||||| ||| ||| || | || |||||| | || ||||||||||||| || || || Sbjct 871979 TCCAACCATGGGTAAGATCACCTCGATGCACTTCTATGGTTGGAAGAAGGGCCTTAAGAC 872038 Query 113315 GGGGATGTATTACCTCCG 113332 || ||||| ||||| || Sbjct 872039 TGGTATGTACTACCTGCG 872056 >seq4 Length=1514682 Score = 100 bits (110), Expect = 4e-16 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 102172 CCTTT--GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||||| |||||||| || |||| | || | || |||||||||||||| || || Sbjct 728875 CCTTTACGCTGAGCGTCTGATCGCCTACGCTGCCATCGAAGGTATCTTCTTCTCAGGATC 728816 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||| | || | |||||||||||| |||||||||||||||||||| ||||||||| Sbjct 728815 GTTCGCTTCGATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCAGGTCTCACCTTCTCCAA 728756 Query 102290 CGAGCTTATCTCTCGTGACGAGGG 102313 |||||| |||| | || ||||| Sbjct 728755 CGAGCTCATCTGCAGAGATGAGGG 728732 >seq2 Length=2777425 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 163546 CTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGC 163605 |||||| || ||||| ||||| || || ||||| || ||||||||||| | ||||| Sbjct 1644370 CTATGGACGCGTTGCTCCACGTTCGGGACTCGCCGTCAAACACGGTATTGACACCGGTGC 1644311 Query 163606 GGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGA 163665 ||||| ||||| |||| |||| || || | | ||||||| ||||| || || Sbjct 1644310 CGGTGTGATTGACGCCGATTACAGAGGAAAACTGGGAATCGTTCTGTTCAACCACTCCGA 1644251 Query 163666 CAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGA 163718 || ||||||||| | ||| || || || || || || | |||| |||| Sbjct 1644250 TAAGGACTTTGAGATCAAGCAAGGAGACCGGATTGCCCAGTTGCTTCTCGAGA 1644198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742283610800