Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq5 96.9 4e-15 >seq1 Length=2842153 Score = 233 bits (258), Expect = 2e-56 Identities = 956/1485 (64%), Gaps = 63/1485 (4%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || ||||| ||||| |||| || | ||| || | ||||| Sbjct 871712 GTAGATGTTGGAAGTGTATGGCTCGAAGCACTCGTTGTAACCCATGATCTGGGAGGTGGA 871653 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTT--CGTCTTTACC 109866 ||| || ||||| ||||||| | || ||||| || || ||| || ||| | Sbjct 871652 AGCAGTTGGCATTGGAGCCACCAAGAGCGAGTTTCTAAGTCCGGTCTTGGCGATCTTAGC 871593 Query 109867 CGCTCACGCATTGC-GTCCCAATCATAACGACCACTAAATTTAG--TCTCACCATCCCAC 109923 | || ||| | |||||| || | || || | ||| || |||| Sbjct 871592 CTTCAACTCATCCCAGTCCCA--CAGATCGG---------TTGGCTTCTTGCC---CCAC 871547 Query 109924 ATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCC 109983 | ||| || | | ||||| | || || || |||| | | |||||||| || || Sbjct 871546 AGATCGTACTGCAAGATACCCTTGGAGGCTGGCGAGCCCTCGTAGGTCTCGTAC-ACACC 871488 Query 109984 TCAACCTCGG---CCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAA 110040 | |||||| |||||||||| |||||||| | || || || || || ||||| || Sbjct 871487 TT--CCTCGGTGGCCAACTCGGACGAAGCCTCCAAAGCTGCGTGGTAGATGGTCTCGAAG 871430 Query 110041 ATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAAC 110100 || || ||||| || | |||| ||||||| || |||| || || | || Sbjct 871429 ATCTGGATATTCAACTCACGGGCCTCTGGGGAGTCGAATGGCAGACGGCACAGGAAGAAA 871370 Query 110101 ACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGA 110160 || || | ||| || ||||||||| ||| || | | |||||||||| || ||| Sbjct 871369 GTGTCGGCCAAACCTTGCACACCGAGAGCAACAGGTCTGTTTCTCATGTTAGAACGGCGA 871310 Query 110161 GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 || | || ||||| |||| ||||| ||||| | || | || || | | | Sbjct 871309 GCCTCTGGAACTGGGTAGTAGTTCCGGTCAATGACACAGTTCAAGTTACGAGTAAGAACC 871250 Query 110221 TTCGTGATTTCATGGAGTTTGTC------GTAATCGAACGTTTT-----CGTC-TCCTTA 110268 || |||| | || | || || |||| | | | ||| ||| |||| Sbjct 871249 TTGATGATCTGGTGCAACTTCTCAAAGTTGTAAGAGGAAGATTTGTTGGCGTTGTCCTGC 871190 Query 110269 TTGACATATTTGGGGAGAGCA-ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 | |||| | || | |||| | || || | || || || | | || ||| Sbjct 871189 TCGACAAAGGCTGGCA-AGCAGACGGAAGCCAAGTTACAGACGGCAACTTCCTCTGGAGA 871131 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 || ||| || | || || |||||||||||| ||| ||| ||||| ||||| ||| Sbjct 871130 GGAGTACTCAACAACCTCACAGCACAAGTTGGAAGACTTGATGGTACCCAGGTTCTGCTG 871071 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || || ||| |||||| || ||||| |||| |||| |||| |||||||| || ||||| Sbjct 871070 GTTGGACTTGCGGTTGCAAGCGTCCTTGTAGACCATGAATGGAGTACCAGTCTCGGTCTG 871011 Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCT 110505 | || | ||| | ||| | | || | ||| || || ||| | | | || Sbjct 871010 GGCCTCCAAGATGTGGTACCACAGCTTCTG-GGCCTTGATGGTA-CGTCTTCCACGTCCC 870953 Query 110506 TCCTCCTCGTA-CT-TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563 || |||||| || | || | | || || || || | |||||| ||||| ||||||| Sbjct 870952 TCGCGCTCGTATCTCTCGTAGAGACGT--TCGAACTCGTCTCCGTAGACATCGGAAAGAC 870895 Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623 | |||| ||| ||||||| | ||| | |||| || | |||||||| Sbjct 870894 CTGGGGCCTCCGATGGAGAGAAGAGAGTCCACGTGGAGTTGGCCTCGACACGCTTCATGA 870835 Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683 | |||||||||||||||| || | ||| | ||||||| ||| ||| || | ||| | Sbjct 870834 AGAGGTCAGGAATCCACAGGGCTGGGAACAAGTCACGGGCACGGATCTCCTCCTTACCGT 870775 Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743 |||| || | || | ||| | ||| || | ||||||||| ||||| |||| | Sbjct 870774 GGTTTTTACGGATGTCGGTGAGGTCGAAGATGTCAGCGTGCCATGGCTCGAGGTAGATGG 870715 Query 110744 CGATG------GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGA 110797 ||||| | || ||| || || | |||| || || || || ||| |||| Sbjct 870714 CGATGGCACCAGGTCTCTTGTTACCAC---CTTGGTCCACGTAACGGGCCGTGTTGTTGA 870658 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857 |||| | || ||| ||||| || || | ||| ||| || ||||| ||| || Sbjct 870657 AGACACGGACCATTGGAATGATACCGTTGGAAGTACCGTTGGTACCGGCAATGTAAGAGC 870598 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 | ||||||| |||| |||||| |||| ||| || ||||| || ||| || | | Sbjct 870597 CAGTGGCACGGATGTTGTGGATGTGCAAACCGATTCCACCGGCGGTCTTGGAGATGAGAG 870538 Query 110918 CACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 |||||| | | ||| | || ||||| || || || || |||| |||||| | | Sbjct 870537 CACACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCCTCCTTCATGGCAACCAAGA 870478 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 ||||||| ||||| |||||||| || || || || ||||| || || || | || || Sbjct 870477 AGCAAGACGACATTTGAGGACGTGGAGTACCGGCGTTGAACAGAGTTGGCGAAGCGTGCG 870418 Query 111038 TGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC-- 111095 |||| || | ||||| |||||| || ||||| | | || || || Sbjct 870417 TGAAGTAACGCTCCGACATGAGGTTGTAAGTCTCGAGGAC--TTTTTCAATGTTGTCCGA 870360 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 ||| | |||||||||||||| ||||| ||| | ||||| | ||| | || || || Sbjct 870359 GTGGACACCAATGGCAACTCTCATGATCATGTGCTGAGGTCTCTCGGCAACTTTACCGTC 870300 Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 || | | |||||||| ||| |||||||||| |||||||| Sbjct 870299 GACTCTCAGAAGGTAAGAACGCTCCAGGGTCTTGAATCCAAAGTA 870255 Score = 145 bits (160), Expect = 9e-30 Identities = 311/458 (68%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| || || ||||||||||| | | | || || || ||| ||||||| ||||| ||| | Sbjct 1668176 ATCAGCGAGTCCCTGAACACCAACAGCCATAGGACGGTGCCTCATGTTGGAGCGACGA-C 1668234 Query 110163 AGT-TTCTACGGGGTAAA-AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 | | ||||| ||||| |||| | ||||||||| |||||| || || | Sbjct 1668235 ACTCTTCTAACGGGTACTCAGTT-CTATCGATGACCTTATTGAGGTTGCGAACTACCACC 1668293 Query 110221 TTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTG 110280 || || | | ||| | | | |||||| || ||||| | |||| || | Sbjct 1668294 TTGGTCACCTTATGCAACAGCTTAAAGTCGAAC-TTGTCGTCGC-----TGACGAATGTC 1668347 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || ||| | | || | ||||||||||| | | |||| ||||| | |||||| | | Sbjct 1668348 GGAAGACCCAACGAGGATAGATTGCACACTGCAATCTCATCTTTCGATGAGTATTCGACA 1668407 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 ||||| ||||| ||||| ||||||| ||||||||||| || |||||||| | Sbjct 1668408 ATTTCACAACACAGATTGGACGACTTAATGGTTCCCAAGTTCTTTTGGTTCGATTTCCGG 1668467 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 |||||||||||||| || |||||| |||| ||||| || || ||||| || | ||||| Sbjct 1668468 TTGCATGCATCCTTGTAAAGCATGAATGGAGTACCTGTCTCTGTCTGCGAGTATAGAATC 1668527 Query 110461 GCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTG 110520 || ||| || | ||| | || || | | || ||||| ||||||| || Sbjct 1668528 TTCTCCCACACTTTCCTGGCACGAACTGTATCCATCTGAAGTCCTTCTGCCTCGTATTTT 1668587 Query 110521 GTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGA 110558 ||||| | || ||||||| || ||||||||||| Sbjct 1668588 TGGTACAGTGCATCGAATTCCTCCCCATACACATCAGA 1668625 >seq5 Length=294752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 312/474 (66%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||| ||||| | | || || | ||||| || || |||||| ||| |||| Sbjct 136452 ATCGAAACGGCCTGGTCTCAACAGTGCCTTGTCAAGCATGTCAGGACGGTTAGTACCGGC 136511 Query 11565 AATGACTACAATGCCA--GTCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 || || |||| || ||| | | |||||||||||||||| || || | |||||| Sbjct 136512 AAGCACAACAA---CATGGTCACTTGTGTCGAAACCGTCCATCTCAACAAGCAACTGGTT 136568 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-CACCTGCCGAACGCTTCTTACCGA 11680 | || || |||||| |||| |||| | ||| | | || ||||| Sbjct 136569 AAGGGTGGCCTCCTTCTCATCATTGGCCCGCATTGGCGACTGTTCACGGGCTCC-ACCGA 136627 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC---CTGTTCGA 11737 || || || ||||| ||||| | ||||| |||| | | ||| | || | Sbjct 136628 TGGCATCGATTTCATCAATGAAAATGATAC----TTGGAGCGAGCTTGCGGGCGGTGGCA 136683 Query 11738 AA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || | ||||| |||||| || || ||||| || |||||||| ||||| | | || Sbjct 136684 AACAAGTCACGGACACGCGAGGCACCCACACCGACAAACATCTCCACGAACTCGGAACCA 136743 Query 11797 GAACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || ||| ||| | || || || | ||||||||| | || || || | || || Sbjct 136744 GA-CACAGAAAGGAAAGGCACTCCGGCCTCACCAGCAGTAGCCTTGGCAAGCAAGGTTTT 136802 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||| |||||||| | |||| ||| | ||| || | |||||||||||||| | Sbjct 136803 ACCGGTACCAGGAGGTCCAGAGAGGACGGCACCTCTTGGGATCTTGGCACCGAGCCGCTC 136862 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || |||||||||||||||| ||||| |||| | ||||| ||||| Sbjct 136863 ATACTTCTGAGGCTTCTTGAGGAAGCTCACAAACTCCATGATCTCCTCTTTGGC 136916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975889567000