Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq4 132 3e-26
seq3 113 3e-20
>seq4
Length=1514682
Score = 132 bits (146), Expect = 3e-26
Identities = 171/232 (74%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || ||||| || | ||||||||| | ||| ||||||||||||||| ||||| |||
Sbjct 88912 CCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAA 88971
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| |||| ||| || |||||||| || || |||||||||||| | ||
Sbjct 88972 AGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGG 89031
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTC 34930
| || ||||| || |||||||| ||||| || | || || | ||| | ||
Sbjct 89032 ATACCTTCCTTATCTTGGATCTTCTGCTTGAC--AT--TGTCAATGGTGTCCGAAGATTC 89087
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| |||| || || || || || || |||||||| || ||||||||||||
Sbjct 89088 GACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCATA 89139
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || ||||| || | ||||||||| | || || || || ||||| || || |||
Sbjct 89368 CCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAA 89427
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| ||| |||| |||| ||| || |||||||| || || |||||||||||| | ||
Sbjct 89428 AGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGG 89487
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || ||||| || ||||| || |||||| | || | || || ||||||
Sbjct 89488 ATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACC 89547
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || ||||| || || ||||| ||||| || |||||||||||
Sbjct 89548 TCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||| || |||| || | |||||||| | ||| || ||||||||||| ||||| |
Sbjct 1333657 TTCCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 1333598
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| ||| | || || ||||| || ||||| || || |||| ||||||||| | |
Sbjct 1333597 AAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAG 1333538
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | ||||||||||| |||||||| |||||| | || | || | ||| |
Sbjct 1333537 GAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCA 1333478
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| |||| ||| ||||| || || || || ||||| || || ||||||||
Sbjct 1333477 CCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429
Score = 109 bits (120), Expect = 4e-19
Identities = 153/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||| ||||| ||||| ||||| |||||| ||| |||| |||
Sbjct 88702 ACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCTCC 88761
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || ||||| || || || |||||||||||| | || | || ||||| ||
Sbjct 88762 AACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGG 88821
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||||| ||||| | ||||||| || || ||| || || | || || ||
Sbjct 88822 ATCTTCTGCTTGAC----GTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGT 88877
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || | ||||| || ||||||||||||
Sbjct 88878 CTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 88911
Score = 100 bits (110), Expect = 2e-16
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||| ||||| ||||| |||||| ||| | || |||
Sbjct 89158 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCGTCTTCC 89217
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || |||| ||||||||| | || | |||||||| ||
Sbjct 89218 AACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTGG 89277
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||||| |||||| ||||||| || || ||| || || | || || ||
Sbjct 89278 ATCTTCTGCTTGACGT----TATCGATAGTGTCGGAGGACTCCACTTCAAGAGTGATTGT 89333
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || | ||||| || ||||||||||||
Sbjct 89334 CTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 89367
>seq3
Length=1705961
Score = 113 bits (124), Expect = 3e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || |||| |||| ||||||||| | || || ||||| ||||| |||||||||
Sbjct 1462856 CCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1462797
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || | || |||| ||| || || || || || |||| |||||||| | ||
Sbjct 1462796 AGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGG 1462737
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||||||||| |||||||| |||||| | || | || | ||||||
Sbjct 1462736 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACC 1462677
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||| ||| || || ||||| || || || || || || |||||||| ||
Sbjct 1462676 TCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTT 1462627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633540652920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |