Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-31 seq4 93.3 3e-13 >seq1 Length=2842153 Score = 154 bits (170), Expect = 1e-31 Identities = 367/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||| | ||||||||||| ||| |||||||| | ||| | | | Sbjct 282990 GCTATCGGAATTGATCTCGGAACCACATACTCTTGCGTTGGTGTCTTCCAACAAGAGAGG 282931 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| ||| |||| ||||| ||||| || |||||||| |||||||| || | ||||| Sbjct 282930 GTTGAGATTGTTGCAAATGACCAAGGAAATAGAACTACGCCATCTTACGTGGCATTCACT 282871 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || | || | | | | ||||| || || || | || || | || |||||||| Sbjct 282870 GACAGCGAGCGTCTGATCGGTGAGGCCGCCAAGAACCAGGCTGCCATGAACCCTACCAAC 282811 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | |||||||| || | | ||||| |||| || | ||| | || |||| Sbjct 282810 ACTGTCTTTGATGCCAAGAGACTCATTGGTAGAAAGTTCAGCGATGCTGAAGTCCAGGGC 282751 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| ||||||||| | | || | ||| |||||| || | ||| | | | Sbjct 282750 GATATGAAGCACTGGCCTTTCAAGGTGGTCGACGTTGGTGGAAAGCCAAAGATTCAGGTC 282691 Query 550291 TACTCATGAAGGATCTGTTAAACAA--TTTTCA--CCAGAACAAATTTCATCTATGGTTT 550346 | | |||| | | | ||| |||||| || || | || || ||||||||| Sbjct 282690 GAGT--ACAAGGGTGAG---ACCAAGGTTTTCACCCCTGAGGAGATCTCGTCTATGGTTC 282636 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | || ||||| | || || |||| | ||| | | || | || || || Sbjct 282635 TCTCCAAGATGAAGGAGACTGCTGAGGCTTACCTCGGTGAGAAGGTCAATGACGCCGTTG 282576 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| ||||| || || || ||||| || | || ||||| || || || || | Sbjct 282575 TCACTGTCCCAGCTTACTTCAACGACTCCCAGAGACAGGCTACCAAGGACGCCGGTACCA 282516 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | ||||| | || || | | ||||| ||||| ||||| |||||||| |||| || | Sbjct 282515 TCACTGGAATGAACATTATGAGAATTATTAATGAGCCTACCGCTGCTGCCATTGCTTACG 282456 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 282455 GTCTTGACAA 282446 >seq4 Length=1514682 Score = 93.3 bits (102), Expect = 3e-13 Identities = 196/290 (68%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTG--GTGTTTGGCAAAATGGTA 550049 ||||| ||||| ||| | |||||||| || ||||||| || | || ||| | | | Sbjct 259690 GCTATTGGTATCGATCTCGGAACCACGTACTCGTGTGTTGCCGTCTATGACAAGACCGGA 259631 Query 550050 AA-GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || ||||| ||||| || || |||||||||||||| |||||||| ||||| ||||| Sbjct 259630 GGTGTGGAAATCATTGCTAACGAGCAAGGTAACAGAACCACTCCATCGTATGTCGCTTTC 259571 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || | || | || || ||||| || || | || ||| || || || ||| Sbjct 259570 ACTCCAGAGGAGAGACTCGTCGGAGATGCTGCCAAGAACCAGGCCGCTTTGAACCCAACC 259511 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | || || ||||| ||| | ||||| | | || |||| || | ||| Sbjct 259510 AACACTGTGTTCGACGCTAAGCGTATGATTGGCCGTGGATTCGCTGATGAGAACATCCAG 259451 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC 550278 || |||||| |||||||||| | || || | | ||||||| || Sbjct 259450 AAGGACATGAAGACTTGGCCTTTCAAGGTTATTGACGAGGCTGGAAACCC 259401 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342 |||||| ||| ||||| |||| || || | ||| || | || || |||||||| Sbjct 88947 TTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAA 89006 Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402 ||||| | |||||| || || || || ||||| |||||||| || || || || || Sbjct 89007 GATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTCTGCTTGACATT 89066 Query 563403 CTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAA 563461 ||||| || || | || | | ||||| || | ||| |||||||||||||| || | Sbjct 89067 GTCAATGGTGTCCGAA-GATTCGACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGA 89125 Query 563462 CGAAAATTTGCATA 563475 |||| || |||||| Sbjct 89126 CGAAGATCTGCATA 89139 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| |||||||| || || || || || ||||| || |||||||| Sbjct 1333611 AATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCT 1333552 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||| || ||||||||||| || || || || || || || || || ||||| || Sbjct 1333551 CTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGT 1333492 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 || | || | || ||||| || | || ||||| || || || || |||||||| | Sbjct 1333491 GTC-GGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCT 1333433 Query 563471 GCAT 563474 |||| Sbjct 1333432 GCAT 1333429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295206732350