Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 1e-31
seq4 93.3 3e-13
>seq1
Length=2842153
Score = 154 bits (170), Expect = 1e-31
Identities = 367/550 (67%), Gaps = 10/550 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||||| || || ||| | ||||||||||| ||| |||||||| | ||| | | |
Sbjct 282990 GCTATCGGAATTGATCTCGGAACCACATACTCTTGCGTTGGTGTCTTCCAACAAGAGAGG 282931
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||| ||| |||| ||||| ||||| || |||||||| |||||||| || | |||||
Sbjct 282930 GTTGAGATTGTTGCAAATGACCAAGGAAATAGAACTACGCCATCTTACGTGGCATTCACT 282871
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| | || | | | | ||||| || || || | || || | || ||||||||
Sbjct 282870 GACAGCGAGCGTCTGATCGGTGAGGCCGCCAAGAACCAGGCTGCCATGAACCCTACCAAC 282811
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
||| | |||||||| || | | ||||| |||| || | ||| | || ||||
Sbjct 282810 ACTGTCTTTGATGCCAAGAGACTCATTGGTAGAAAGTTCAGCGATGCTGAAGTCCAGGGC 282751
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290
||||||||||| ||||||||| | | || | ||| |||||| || | ||| | | |
Sbjct 282750 GATATGAAGCACTGGCCTTTCAAGGTGGTCGACGTTGGTGGAAAGCCAAAGATTCAGGTC 282691
Query 550291 TACTCATGAAGGATCTGTTAAACAA--TTTTCA--CCAGAACAAATTTCATCTATGGTTT 550346
| | |||| | | | ||| |||||| || || | || || |||||||||
Sbjct 282690 GAGT--ACAAGGGTGAG---ACCAAGGTTTTCACCCCTGAGGAGATCTCGTCTATGGTTC 282636
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| || ||||| | || || |||| | ||| | | || | || || ||
Sbjct 282635 TCTCCAAGATGAAGGAGACTGCTGAGGCTTACCTCGGTGAGAAGGTCAATGACGCCGTTG 282576
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| ||||| ||||| || || || ||||| || | || ||||| || || || || |
Sbjct 282575 TCACTGTCCCAGCTTACTTCAACGACTCCCAGAGACAGGCTACCAAGGACGCCGGTACCA 282516
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| ||||| | || || | | ||||| ||||| ||||| |||||||| |||| || |
Sbjct 282515 TCACTGGAATGAACATTATGAGAATTATTAATGAGCCTACCGCTGCTGCCATTGCTTACG 282456
Query 550527 GACTTGATAA 550536
| ||||| ||
Sbjct 282455 GTCTTGACAA 282446
>seq4
Length=1514682
Score = 93.3 bits (102), Expect = 3e-13
Identities = 196/290 (68%), Gaps = 3/290 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTG--GTGTTTGGCAAAATGGTA 550049
||||| ||||| ||| | |||||||| || ||||||| || | || ||| | | |
Sbjct 259690 GCTATTGGTATCGATCTCGGAACCACGTACTCGTGTGTTGCCGTCTATGACAAGACCGGA 259631
Query 550050 AA-GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108
|| ||||| ||||| || || |||||||||||||| |||||||| ||||| |||||
Sbjct 259630 GGTGTGGAAATCATTGCTAACGAGCAAGGTAACAGAACCACTCCATCGTATGTCGCTTTC 259571
Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168
|| | || | || || ||||| || || | || ||| || || || |||
Sbjct 259570 ACTCCAGAGGAGAGACTCGTCGGAGATGCTGCCAAGAACCAGGCCGCTTTGAACCCAACC 259511
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|| ||| | || || ||||| ||| | ||||| | | || |||| || | |||
Sbjct 259510 AACACTGTGTTCGACGCTAAGCGTATGATTGGCCGTGGATTCGCTGATGAGAACATCCAG 259451
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC 550278
|| |||||| |||||||||| | || || | | ||||||| ||
Sbjct 259450 AAGGACATGAAGACTTGGCCTTTCAAGGTTATTGACGAGGCTGGAAACCC 259401
Score = 91.5 bits (100), Expect = 1e-12
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 563283 TTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAA 563342
|||||| ||| ||||| |||| || || | ||| || | || || ||||||||
Sbjct 88947 TTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAA 89006
Query 563343 AATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGC 563402
||||| | |||||| || || || || ||||| |||||||| || || || || ||
Sbjct 89007 GATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTCTGCTTGACATT 89066
Query 563403 CTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAA 563461
||||| || || | || | | ||||| || | ||| |||||||||||||| || |
Sbjct 89067 GTCAATGGTGTCCGAA-GATTCGACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGA 89125
Query 563462 CGAAAATTTGCATA 563475
|||| || ||||||
Sbjct 89126 CGAAGATCTGCATA 89139
Score = 91.5 bits (100), Expect = 1e-12
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| |||| |||||||| || || || || || ||||| || ||||||||
Sbjct 1333611 AATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCT 1333552
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
||||| || ||||||||||| || || || || || || || || || ||||| ||
Sbjct 1333551 CTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGT 1333492
Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470
|| | || | || ||||| || | || ||||| || || || || |||||||| |
Sbjct 1333491 GTC-GGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCT 1333433
Query 563471 GCAT 563474
||||
Sbjct 1333432 GCAT 1333429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029295206732350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |