Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 275 1e-68 seq4 187 5e-42 >seq1 Length=2842153 Score = 275 bits (304), Expect = 1e-68 Identities = 1201/1869 (64%), Gaps = 86/1869 (5%) Strand=Plus/Minus Query 212572 CAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGT 212631 |||| ||||||| ||| || || |||||||| || ||||| |||||||| ||| || | Sbjct 872073 CAGCGGCAGCCTGGGTACGCAGGTAGTACATACCAGTCTTAAGGCCCTTCTTCCAACCAT 872014 Query 212632 GCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGAT 212691 | |||||| | |||| |||| | | | ||| | | || || | Sbjct 872013 AGAAGTGCATCGAGGTGA---TCTTACCCATGGT----TGGAGA----CTTG----AGGT 871969 Query 212692 GTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGA 212751 | | ||||| |||| |||||| | | | | | ||||| ||||||||||| |||| Sbjct 871968 GGATGTTCATCGACTCGGACTGGTCAACGTAGGCACCTCTGTCGGCGGCCATGTCGATGA 871909 Query 212752 TATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC 212811 | | | ||||||| |||||||||||||||| |||| | ||||| || ||||| | | Sbjct 871908 TTCCCTTTTGGGAGATCTCCCACACGGTCTTGTAGATCTTCTTGAGTTCGTCTGGAACGT 871849 Query 212812 CGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCG--CATGTCCTCGTT 212869 || | || ||| | || || | | || | | || || ||| | |||| Sbjct 871848 TAGGAAGGTGCTGGATCGAACCGTTATCACTGATGA--TGTAGTTCTTCATAGCATCGTC 871791 Query 212870 CCAGAGGCCCCTGGTCTCC--AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCA 212927 ||||| || |||| | || ||| || || || ||||||||| |||||||| ||| Sbjct 871790 CCAGATTCCAA-GGTCGACCAAGTCACG-GAGCATGTAAGGGTTGACGATCTGGAACTCA 871733 Query 212928 CCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTC 212987 || | |||||| || | | ||| | ||| |||||||| ||||||| || |||||||| Sbjct 871732 CCGGCGAGCACTCTACGCGAGTAGATGTTGGAAGTGTATGGCTCGAAGCACTCGTTGTAA 871673 Query 212988 CCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACT 213047 |||| ||||| | ||| || || ||||| |||||||||| ||| ||| || | | Sbjct 871672 CCCATGATCTGGGAGGTGGAAGCAGTTGGCATTGGAGCCACCAAGAGCGAGTTTCTAAGT 871613 Query 213048 CCGTGCTCGCCGATG--AGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCT 213105 ||| || | |||| || | | | ||| |||||||||| |||| ||| | Sbjct 871612 CCGGTCTTGGCGATCTTAGCCTTCAA--CTCATCCCAGTCCCA-----CAGATCGGT--T 871562 Query 213106 CGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGT 213165 | |||| | ||||| || |||||||||| || ||| | || ||||| || Sbjct 871561 GG--CTTCTTGCCCCACAGATCGTACTGCAAGATACCCTTGGAGGCTGGCGAGCCCTCGT 871504 Query 213166 AAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGT 213225 | | ||| || | ||| |||||| |||| | || |||| || || |||| || Sbjct 871503 AGGTCTCGTACACACCTTCCTCGGTGGCCAACTCGGACGAAGCCTCCAAAGCTGCGTGGT 871444 Query 213226 AGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCA 213285 ||||||| || || |||| | || | || |||||||||||| ||| || || Sbjct 871443 AGATGGTCTCGAAGATCTGGATATTCAACTCACGGGCCTCTGGGGAGTCGAATGG---CA 871387 Query 213286 TCATGCGTTGGAACACA---TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTC 213342 || |||| | | || |||| || || || |||| | | ||||||| || Sbjct 871386 GACGGCACAGGAAGAAAGTGTCGGCCAAACCTTGCACACCGAGAGCAACAGGTCTGTTTC 871327 Query 213343 TCAGGTTAG-ACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 ||| ||||| || |||| ||| | ||||| |||| | ||| |||| ||| Sbjct 871326 TCATGTTAGAACGGCGAGC-CTCTGGAACTGGGTAGTAGTTCCGGTCAATGACACAGTTC 871268 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTG-AACA------- 213453 | ||| || || || ||| ||| ||| || | ||| ||| || | Sbjct 871267 AAGTTACGAGTAAGAACCTTGATGATCTGGTGCAACTTCTCAAAGTTGTAAGAGGAAGAT 871208 Query 213454 -CGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACG 213509 || | | ||||||| ||||| | |||| | || | |||| ||| || ||| Sbjct 871207 TTGTTGGCGTTGTCCTGCTCGACAAAGGCTGGCAAGCAGACGGAAGCCAAGTTACAGACG 871148 Query 213510 GCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 || || |||| ||||| | |||||| | | ||| ||||| |||| | | Sbjct 871147 GCAACTTCCTCTGGAGAG---GAGTACTCAACAACCTCACAGCACAAGTTGGAAGACTTG 871091 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAG 213626 ||||| ||||||||||| ||||| ||||| |||| || |||||||||| |||| | Sbjct 871090 ATGGTACCCAGGTTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGACCATGAAT 871031 Query 213627 GGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACC 213686 || | || ||||| ||||| | ||| || ||| ||| || | | |||||||| Sbjct 871030 GGAGTACCAGTCTCGGTCTGGGCCTCCAAGATGTGGTACCACAGCTTCTGGGCCTTGATG 870971 Query 213687 ACCCGCCTGACA-GCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTT-GAATTCGT 213744 || || || | || ||| |||||| |||||||| |||| ||| |||| Sbjct 870970 GTACGTCTTCCACGTCCCTCGCG----CTCGTATCTCTCGTAGAG-ACGTTCGAACTCGT 870916 Query 213745 GGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG--GGACACATGAGGCTCCA-GTCCC 213801 || |||| | || || || | | || ||| | | ||| |||| || Sbjct 870915 CTCCGTAGACATCGGAAAGACCTGG--GGCCTCCGATGGAGAGAAGAGAGTCCACGTGGA 870858 Query 213802 CGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCC 213861 | ||| ||| | || |||||| ||||| || | |||||| || | ||||| ||| | Sbjct 870857 GTTGGCCTC-GACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCTGGGAACAAGTCAC 870799 Query 213862 TGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCG 213921 || | |||| ||| || |||||| || | || | ||| |||||||| | Sbjct 870798 GGGCACGGATCTCCTCCTTACCGTGGTTTTTACGGATGTCGGTGAGGTCGAAGATGTCAG 870739 Query 213922 CGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCA 213978 ||||||| ||||| | ||||||||| | ||| || || |||||| || || ||||||| Sbjct 870738 CGTGCCATGGCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCTTGGTCCA 870679 Query 213979 CCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGT 214038 | | |||| ||||||||| || | | || | | |||||||| |||| Sbjct 870678 CGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAAGTACCGT 870619 Query 214039 TGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCAC 214098 |||| || || || || ||||| | ||| | | |||| ||| | || || |||| Sbjct 870618 TGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAACCGATTCCAC 870559 Query 214099 CGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGT 214158 ||||| ||||||||| | || || || ||| ||| || ||| || | ||| || Sbjct 870558 CGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGT 870499 Query 214159 CATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG-GGGCCTGGACGAGCCAGAGTTG 214217 | || | | | | ||||||||| ||| | || || | |||| | || | |||| Sbjct 870498 CCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGA-GTACCGGCGTTG 870440 Query 214218 AAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGG 214277 || || || || || || | | | | || | ||| |||| ||||| ||| Sbjct 870439 AACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTCTCGAGG 870380 Query 214278 ACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGC 214337 ||| |||| || | ||||| | || ||||| | ||||||||| || Sbjct 870379 ACTTTTTCAATGTTGTCCGAGTGGACACCAATGGCAACTCTCATGATCATGTGCTGAGGT 870320 Query 214338 CTCTCTATGGGTCCTTT---GGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAAC 214394 ||||| || |||| | | | | || ||||| || |||||||| |||||||| Sbjct 870319 CTCTC---GGCAACTTTACCGTCGACTCTCAGAAGGTAAGAACGCTCCAGGGTCTTGAAT 870263 Query 214395 CCAAAGTAG 214403 ||||||||| Sbjct 870262 CCAAAGTAG 870254 >seq4 Length=1514682 Score = 187 bits (206), Expect = 5e-42 Identities = 307/443 (69%), Gaps = 0/443 (0%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||| ||||| |||||||||| || || | || ||||||| ||||||||| Sbjct 728703 AGAGTAAGCAGGCGAAGTCGGTGTGCAAGCCCTCATCTCTGCAGATGAGCTCGTTGGAGA 728762 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || |||||| ||||||| || |||| ||||||||||| || | ||||| || || | Sbjct 728763 AGGTGAGACCTGGCATGAGACCTCTCTTCTTGAGCCAGAAGATCGAAGCGAACGATCCTG 728822 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| || || | || ||| | ||| | || | ||| || || |||| || Sbjct 728823 AGAAGAAGATACCTTCGATGGCAGCGTAGGCGATCAGACGCTCAGCGTAAAGGGCGTCCT 728882 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| ||||| | |||||| ||||||| |||||| ||| || |||| | Sbjct 728883 TGTTCTCCATCCATCTGACGGCCCAGAGGGCCTTCTCCTTGATAGGTGGGATGTTCTCGA 728942 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 ||||| || | | ||| ||| | | ||| | | ||||| || |||| | Sbjct 728943 TGGCCTCAAACAAGTAGTTGGCCTCGCTTTTGTCGGTGATGTAGGTGTCGATCAGCACGG 729002 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||| |||| ||||| | ||||| | ||||||||| ||||||||||| | ||||| Sbjct 729003 AGTAAGTCTCGGAGTGGATGTTCTCCACCATGATCTGGAAGCCGTAGAAGGCACGGGCCT 729062 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 | || ||| || || || | ||| ||| || ||||| | ||| || || || | Sbjct 729063 CTGGCATCTGAACCTCAGTAGTGAAGTTCTGGCACAAGTTCTCGTCGACGATACCGTCGG 729122 Query 48543 AAGCAGCAAAGAAGGCAAGGACA 48565 |||| || ||||| || || ||| Sbjct 729123 AAGCGGCGAAGAATGCGAGCACA 729145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532625337600