Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 196 9e-45 seq4 178 2e-39 >seq1 Length=2842153 Score = 196 bits (216), Expect = 9e-45 Identities = 568/856 (66%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 |||||||||| ||||||| | || || |||||||| ||| |||||||||||||| || Sbjct 871095 ACTTGATGGTACCCAGGTTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGACCA 871036 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC 221900 | || ||| |||||||| ||| ||| ||| || | || ||| || | ||||| | Sbjct 871035 TGAATGGAGTACCAGTCTCGGTCTGGGCCTCCAAGATGTGGTACCACAGCT-TCTGGGCC 870977 Query 221901 TC-ACCGTCC-TCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAA 221958 | | || | |||| | |||||| || | || | ||| ||| | | || || Sbjct 870976 TTGATGGTACGTCTTCCACGT-CCCTCGCGCTCGT-ATCTCTCGTAGAGA-CGT-TCGAA 870921 Query 221959 CTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCA-GT 222017 || || ||||| | ||| || ||||| | | ||| | | ||| |||| || Sbjct 870920 CTCGTCTCCGTAGACATCGGAAAGACCTGGGGCCTCCGATGGAGAGAAGAGAGTCCACGT 870861 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | |||| | | ||| | || |||||||||||| || |||||||| || | || | | Sbjct 870860 GGA-GTTGGCCTCGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCTGGGAACAAGT 870802 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | || || ||||||| |||| |||||| | | || | || || |||| Sbjct 870801 CACGGGCACGGATCTCCTCCTTACCGTGGTTTTTACGGATGTCGGTGAGGTCGAAGATGT 870742 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 |||||||||| ||||| || |||| ||| | || || |||| |||||| ||||| || | Sbjct 870741 CAGCGTGCCATGGCTCGAGGTAGATGGCGATGGCACCAGGTCTCTTGTTACCACCTTGGT 870682 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 |||| | || |||||||| || | | || | | |||||||| || Sbjct 870681 CCACGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAAGTAC 870622 Query 222258 CGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA-CATGCCGATA 222316 ||||||| || |||||| | || ||| | | ||| ||| | || ||||| Sbjct 870621 CGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTG-TGGATGTGCAAACCGATT 870563 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 ||||||||| || ||||| | || || ||| | ||| || ||| || || || Sbjct 870562 CCACCGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCGATG 870503 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG-ATTTGGTGGAACAGGC 222435 ||||||||||| | | | || || ||||||||||| |||| | ||| | | | ||| Sbjct 870502 GAGTCCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACC-GGC 870444 Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| ||||| || || ||||| || ||||| | | ||||| || | ||| ||||| Sbjct 870443 GTTGAACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTCTC 870384 Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 | |||| | | ||||||||| ||| | ||||| ||||||| ||||| ||| Sbjct 870383 GAGGACTTTTTCAATGTTGTCCGAGTGGACACCAATGGCAACTCTCATGATCATGTGCTG 870324 Query 222556 GGGCCTCTCCACAGG---ACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612 || ||||| || ||| | | || || ||||| || ||||| ||||| Sbjct 870323 AGGTCTCTCGGCAACTTTACCGTCGACTCTC---AGAAGGTAAGAACGCTCCAGGGTCTT 870267 Query 222613 GAACCCAAAGTAGTTG 222628 ||| |||||||||||| Sbjct 870266 GAATCCAAAGTAGTTG 870251 >seq4 Length=1514682 Score = 178 bits (196), Expect = 2e-39 Identities = 441/654 (67%), Gaps = 24/654 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||||||||||||||||||| | ||| ||||||| |||| ||||| || Sbjct 729270 GACATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCACCGAGGAGATCGAC 729211 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAG---ACGAGCAGCATTT--TC 25588 || | ||||| || || |||| || | | || | ||||| | || || Sbjct 729210 TTGTCTAAGGATCTGATCGACTGGAACACCAAGTTGAACGCCAACGAGAGATACTTCATC 729151 Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 || || ||| | |||||||| || || || || ||||| || ||||||| ||||| Sbjct 729150 TCGCGT--GTGCTCGCATTCTTCGCCGCTTCCGACGGTATCGTCGACGAGAACTTGTGCC 729093 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATG 25707 ||| ||||| | || || ||| |||||| ||| |||||||| |||||||| Sbjct 729092 AGAACTTCACTACTGAGGTTCAGATGCCAGAGGCCC-GTGCCTTCTACGGCTTCCAGATC 729034 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGAC 25767 | || || | ||||| ||| || || ||| | || ||||| || ||| Sbjct 729033 ATGGTGGAGAACATCCACTCCGAGACTTACTCCGTGCTGATCGACACCTACATCACCGAC 728974 Query 25768 GTCGCCGAGAGAGATCGGCT-GTTTGGTGCCATCGAGCACATACCCAGC-ATCAAGAGGA 25825 |||| | | | || ||||| ||||||||| |||| |||| | |||||| || Sbjct 728973 AAAAGCGAG-GCCAACTACTTGTTTGAGGCCATCGAGAACAT-CCCACCTATCAAGGAGA 728916 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC-GAGCGGCTG 25884 |||| | |||||| | | ||||| | | | || ||| | || || ||||| ||| Sbjct 728915 AGGCCCTCTGGGCCGTCAGATGGATGGAGAACAAGGACGCC-CTTTACGCTGAGCGTCTG 728857 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 | |||| ||||| | || || ||||| ||| || ||||| || | ||||||||| Sbjct 728856 ATCGCCTACGCTGCCATCGAAGGTATCTTCTTCTCAGGATCGTTCGCTTCGATCTTCTGG 728797 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| ||| || |||||| || || ||| ||||||||||||||| |||| || Sbjct 728796 CTCAAGAAGAGAGGTCTCATGCCAGGTCTCACCTTCTCCAACGAGCTCATCTGCAGAGAT 728737 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 ||||| | |||| || || |||||| | |||| | || ||| ||| |||| || Sbjct 728736 GAGGGCTTGCACACCGACTTCGCCTGCTTACTCTTCTCG---CAC---CTCGACAACACT 728683 Query 26065 TC---TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | | || | |||| ||| ||||||| |||||||| || ||||||||| Sbjct 728682 CCAGACCCAGCCATCGTCACCAGAATCATCACCGAGGCTGTCGATATCGAGAAG 728629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844625841600