Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 147 1e-29 seq4 93.3 3e-13 >seq1 Length=2842153 Score = 147 bits (162), Expect = 1e-29 Identities = 369/554 (67%), Gaps = 10/554 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || |||||| | ||||| || ||| ||| || | ||| | ||| | | | Sbjct 282991 TGCTATCGGAATTGATCTCGGAACCACATACTCTTGCGTTGGTGTCTTCCAACAAGAGAG 282932 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||| ||||||||||| |||||||| || ||||| || || | || || Sbjct 282931 GGTTGAGATTGTTGCAAATGACCAAGGAAATAGAACTACGCCATCTTACGTGGCATTCAC 282872 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| | || | ||| || || || || || || | || ||||| || ||| || Sbjct 282871 TGACAGCGAGCGTCTGATCGGTGAGGCCGCCAAGAACCAGGCTGCCATGAACCCTACCAA 282812 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| | |||||||| || ||| | |||||| | || || ||| | ||||| Sbjct 282811 CACTGTCTTTGATGCCAAGAGACTCATTGGTAGAAAGTTCAGCGATGCTGAAGTCCAGGG 282752 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAA 474625 |||||| || |||||||| |||||| | | |||||||| || ||| | || || Sbjct 282751 CGATATGAAGCACTGGCCTTTCAAGGTGGTCGACGTTGGTGGAAAGCCAAAGATTCAGGT 282692 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTT 474683 | |||| | ||||| || || |||||| || || | || || || |||||| Sbjct 282691 CGAGTACAAG--GGTGAGACCAA--GGTTTTCACCCCTGAGGAGATCTCGTCTATGGTTC 282636 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | |||| ||||| | || || ||| | || || || | | || | ||| || || Sbjct 282635 TCTCCAAGATGAAGGAGACTGCTGAG-GCTTACCTCGGTGAGAAGGTCAATGACGCCGTT 282577 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | ||||| ||||| || || || || || || | || || || || || || || | Sbjct 282576 GTCACTGTCCCAGCTTACTTCAACGACTCCCAGAGACAGGCTACCAAGGACGCCGGTACC 282517 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || | || | || || | | ||||||||||| || || || || || ||||||| Sbjct 282516 ATCACTGGAATGAACATTATGAGAATTATTAATGAGCCTACCGCTGCTGCCATTGCTTAC 282457 Query 474863 GGTCTTGATAAGAA 474876 |||||||| ||||| Sbjct 282456 GGTCTTGACAAGAA 282443 Score = 132 bits (146), Expect = 3e-25 Identities = 443/680 (65%), Gaps = 12/680 (2%) Strand=Plus/Minus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 ||| | || ||||| || || || | || ||| || ||||||| || |||| || || Sbjct 282219 AGAAGACTGAGAACCGCCTGCGAGAGAGCCAAGAGAACTCTTTCCTCCTCTACCCAGACC 282160 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 || |||| | || || || | ||||| || || | | ||| ||| || || || Sbjct 282159 TCTATTGAGATCGACTCCCTCTACGAAGGTATCGACTTCTACACTTCTATCACCAGAGCC 282100 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 | ||| || || | || |||| ||||| ||| || | | || || || | ||| Sbjct 282099 AGATTCGAGGAGCTCTGCGCTGACCTCTTCAGATCCACTCTCGCTCCAGTCGAGAAGGTT 282040 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 |||||||| || || | ||||| || || ||| |||| || || || || |||||||| Sbjct 282039 CTCAGAGACTCCAAGTTGGACAAGTCTCAGGTCGATGAGATCGTCCTCGTTGGAGGTTCT 281980 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAAT--GGTAAAAAGTTAA 475781 || | || || || | |||| | || | | || | | || || || | Sbjct 281979 ACCCGTATCCCTAAGGTCC-AGAAGCTCGTT-AGCGACTTCTTCTCCGGAAAGGAGCCGA 281922 Query 475782 ATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839 | |||| | || |||||||| || || || || || ||||| ||||| || || || Sbjct 281921 AC--AAGTCCATCAACCCTGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCTGCCAT 281864 Query 475840 TTTATCAGGTCAATCAGACGAGAA-ACTAAATAATATTGTACTTG-TTGACGTAACTCCA 475897 | | || ||| | | ||||| || | | | || |||| |||| || |||||| Sbjct 281863 TCTCTCTGGTGACACCTCTGAGAAGACCCAGGACT--TGCTCTTGCTTGATGTCACTCCA 281806 Query 475898 CTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACT 475957 || || | ||| | || || | ||| || | ||||| || || || ||||| || Sbjct 281805 CTCTCTCTCGGTATCGAGACTGCTGGTGGTGTCATGACCAAGCTCATCCCAAGAAACTCT 281746 Query 475958 CCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 ||||||||||||| || ||| | | || || || || |||| || || || ||| Sbjct 281745 ACTATCCCATGCAAGAAGTCAGAGATCTTCTCTACCTACGCTGACAACCAGCCAGGTGTC 281686 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 || || |||| || ||||| |||| || || || || ||| ||||| | Sbjct 281685 TTGATTCAGGTCTTCGAGGGTGAGAGAACTAGAACCAAGGACAACAACTTGCTTGGTAAG 281626 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 ||| | ||| || || || || || || ||||| |||||||| ||||| || || || Sbjct 281625 TTTGAGCTTACTGGAATCCCACCAGCCCCAAGAGGTGTTCCTCAGATTGAGGTCACCTTC 281566 Query 476138 GATATTGATGCAAATGGTAT 476157 || ||||| || || || || Sbjct 281565 GACATTGACGCCAACGGAAT 281546 >seq4 Length=1514682 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | || |||||| ||| || | ||||| || ||||| ||||||||||| Sbjct 89416 TTGTAATCGGAAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGC 89475 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || |||||||| || || |||||||| ||||| ||||| || || Sbjct 89476 TGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCT 89535 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || || || || ||||| ||||| ||||| ||||| || || Sbjct 89536 GAGGACTCAACCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTG 89591 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||||||| || || || ||||| || || || ||||| | || Sbjct 1333607 TTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGC 1333548 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||||||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 1333547 TGGTCTGGAGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCG 1333488 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || |||||||| || ||||| |||||||| || Sbjct 1333487 GAAGACTCCA-CCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTG 1333432 Score = 89.7 bits (98), Expect = 3e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 480581 TTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAA 480640 |||||| || || || |||| || || | | ||| || | ||||| || ||||| Sbjct 88947 TTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAA 89006 Query 480641 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGC 480700 ||||||||||| || || || || || |||||||| ||||| ||||| || |||||| Sbjct 89007 GATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTCTGCTTGACATT 89066 Query 480701 TTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 ||||| || || | | || || || ||||| ||||| || |||||||| || Sbjct 89067 GTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGAC 89126 Query 480761 GAAAATTTG 480769 ||| || || Sbjct 89127 GAAGATCTG 89135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178556577220