Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 163 3e-34 seq4 122 1e-21 seq3 100 3e-15 >seq1 Length=2842153 Score = 163 bits (180), Expect = 3e-34 Identities = 223/309 (72%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| || ||||||| ||| ||||| |||| ||| || | || |||||||| Sbjct 870685 TGGTCCACGTAACGGGCCGTGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAA 870626 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAAAGCC 1630184 |||||||| || || | ||| | ||| | ||| || | ||||| | ||||| || Sbjct 870625 GTACCGTTGGTACCGGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAAA-CC 870567 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | |||||||||||| || ||||| || | || |||||||| || || Sbjct 870566 GATTCCACCGGCGGTCTTGGAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTC 870507 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||||| |||||||| | || | ||||| ||||| |||| || | | || || Sbjct 870506 GATGGAGTCCTCCTTCATGGCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACC 870447 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || || |||| || ||||| | || ||||||| || ||| || Sbjct 870446 GGCGTTGAACAGAGTTGGCGAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGT 870387 Query 1630365 GGCGAGCAC 1630373 |||| || Sbjct 870386 CTCGAGGAC 870378 Score = 100 bits (110), Expect = 3e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 |||||| ||| |||| | |||| ||||||||||||||||||||||||| |||||| | Sbjct 2499775 GGCCTCAGTGGCGATTCTCTCGAAGATGTCGTTGACAAACGAGTTCATGATCGACATGGC 2499716 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGA 1254556 | | |||||| || ||| ||||| ||||||||| |||||||||||| | || || Sbjct 2499715 TCTCTGGGAGATACCAGTGTCTGGGTGGGTCTGCTTGAGGACCTTGTAGATGTAAGAGGA 2499656 >seq4 Length=1514682 Score = 122 bits (134), Expect = 1e-21 Identities = 208/295 (71%), Gaps = 15/295 (5%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| | ||||||||||||||| ||||| | |||||| || || Sbjct 729014 GAGTGGATGTTCTCCACCATGATCTGGAAGCCGTAGAAGGCACGGGCCTCTGGCATCTGA 729073 Query 869693 ACCTCCTTCATGAACCGGCCGGC-CAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAA 869751 ||||| | |||| | ||| || ||||||| | ||||| |||||| |||||||| Sbjct 729074 ACCTCAGTAGTGAAGTT-CTGGCACAAGTTCTCGTCGACGATACCGTCGGAAGCGGCGAA 729132 Query 869752 AAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTG 869808 || || || || || ||| |||| | ||||| | || | | | | ||||| Sbjct 729133 GAATGCGAGCACACGCGAGATGAAGTATCTCTCGTTGGCGTTCAACTTGGTGTTCCAGTC 729192 Query 869809 GACGGTGTCGGCGCTGAG----GTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 || || || || ||| | |||||||| |||||||| ||||||||||||| Sbjct 729193 GATCAGATC----CTTAGACAAGTCGATCTCCTCGGTGGTCCAGAAAGAGGCCTCGGCCT 729248 Query 869865 TTTTGTACATCTCCCATA-CTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 | |||||||||||||| | | ||| ||| ||||||||| | |||||| |||| Sbjct 729249 TCTTGTACATCTCCCAGATGTCGCT-GTACTTGATAGGGAACATGACAAACCGGT 729302 >seq3 Length=1705961 Score = 100 bits (110), Expect = 3e-15 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 |||||| || | ||||| || || | | ||||| ||| || ||||| ||||| || Sbjct 1188615 CATCGGTGGAATCGTGACTTGTGTCATTAGAAACGTTCCGATCGGACTCGGAGAGCC-TG 1188557 Query 19112 CTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGG 19170 |||| ||||| | |||||| | || |||||||||||||||||||| || ||| | |||| Sbjct 1188556 CTTTCGACAAACTTGAGGCCACACTGGCCCACGCCATGCTGTCGATTCCTGCCTCTAAGG 1188497 Query 19171 GATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 |||| ||||| ||| ||| || || ||| Sbjct 1188496 GATTTGAGATCGGCTCCGGTTTCGCTGGT 1188468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137969029755