Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 237 1e-56 seq2 102 6e-16 >seq1 Length=2842153 Score = 237 bits (262), Expect = 1e-56 Identities = 949/1478 (64%), Gaps = 22/1478 (1%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||| | || || | || || ||||| || | || || ||||| ||||| Sbjct 281522 TTCTCAACGGCGGAAACGTTCAAGATTCCGTTGGCGTCAATGTCGAAGGTGACCTCAATC 281581 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || ||||| | || |||||||| || | | ||| | || || || Sbjct 281582 TGAGGAACACCTCTTGGGGCTGGTGGGATTCCAGTAAGCTCAAACTTACCAAGCAAGTTG 281641 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || ||| ||||||||||| | || || || | | || || Sbjct 281642 TTGTCCTTGGTTCTAGTTCTCTCACCCTCGAAGACCTGAATCAAGACACCTGGCTGGTTG 281701 Query 281597 TCTGAATAAGTTGTAAATA-CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || | || || | || | ||||| | || || || || || || | |||||| || Sbjct 281702 TCAGCGTAGGTAGAGAAGATCTCTG-ACTTCTTGCATGGGATAGTAGAGTTTCTTGGGAT 281760 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 | |||||||| | ||||||||| || || | ||| ||||| || ||||||||||||| Sbjct 281761 GAGCTTGGTCATGACACCACCAGCAGTCTCGATACCGAGAGAGAGTGGAGTGACATCAAG 281820 Query 281716 TAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGC 281775 | || | | || || ||| || | |||| ||||| || || || | || Sbjct 281821 CAAGAGCAAGTCCTGGGTCTTCTCAGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGC 281880 Query 281776 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 281835 |||||| || || || || |||||||| || | | | || | | || || ||| Sbjct 281881 AGCACCGTAGGCGACGGCCTCATCAGGGTTGATGGACTTGTTCGGCTCCTTTCCGGAGAA 281940 Query 281836 AAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 || | || || | ||| |||||||| ||||| | || |||||||| | || | Sbjct 281941 GAAGTCGCTAACGAGCT-TCTGGACCTTAGGGATACGGGTAGAACCTCCAACGAGGACGA 281999 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 | |||| ||||| || || |||| || || || | ||| || || || || | | Sbjct 282000 TCTCATCGACCTGAGACTTGTCCAACTTGGAGTCTCTGAGAACCTTCTCGACTGGAGCGA 282059 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 || | ||| || | ||| | || || || |||||| | ||||| || | || | Sbjct 282060 GAGTGGATCTGAAGAGGTCAGCGCAGAGCTCCTCGAATCTGGCTCTGGTGATAGA-AGTG 282118 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || || || |||||| | | || || | ||||| | || || || || || || Sbjct 282119 TAGAAGTCGATACCTTCGTAGAGGGAGTCGATCTCAATAGAGGTCTGGGTAGAGGAGGAA 282178 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG- 282132 || | | || || | || || || || || ||||||| | ||| | ||| || Sbjct 282179 AGAGTTCTCTTGGCTCTCTCGCAGGCGGTTCTCAGTCTTCTGAGAGCTCT--CTGGTTTC 282236 Query 282133 -ATTCAAATCTGTTTTATATTTTCTCTTGAAATC-TTCAACACACCATGTTACAAGACGA 282190 | | | || | || || |||||||| || || || | | | |||| || | | Sbjct 282237 CAGTAAGGTCCTTCTTGTACTTTCTCTTAAACTCGTTGGAGA-AGAATGTCACCAATCTG 282295 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 |||||||| || ||||||||||| | || | || | || || | || | ||| | Sbjct 282296 TTATCAAAGTCCTCACCTCCCAAGTGGGTGTCACCAGCGGTGGCCTTCACCTCGAAGATA 282355 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || || || | ||| | |||| |||||| || || ||||| | ||| || || | Sbjct 282356 CCTTCGTCGATAGAAAGCAGAGAAACATCGAAAGTACCTCCACCAAGATCGAAGATCAAA 282415 Query 282311 ACATTCATTTCT---TTGTCTTGGT---TTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 | ||| || || | |||| | || |||||||| || |||| |||||||| Sbjct 282416 ATGTTCTGCTCGCCCTTAACCTGGTCCTTCTTGTCAAGACCGTAAGCAATGGCAGCAGCG 282475 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || |||||||||||||||| || || | |||| || | || || || || || Sbjct 282476 GTAGGCTCATTAATAATTCTCATAATGTTCATTCCAGTGATGGTACCGGCGTCCTTGGTA 282535 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCT 282484 || ||||| || || ||||| || || || || ||||| | |||||| || | || | Sbjct 282536 GCCTGTCTCTGGGAGTCGTTGAAGTAAGCTGGGACAGTGACAACGGCGTCATTGACCTTC 282595 Query 282485 TTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 282544 | || | ||||| || || | ||||| || | || ||| || || || | Sbjct 282596 TCACCGAGGTAAGCCTCAGCAGTCTCCTTCATCTTGGAGAGAACCATAGACGAGATCTCC 282655 Query 282545 TCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 || || | | ||||| ||| | || || | || | ||| || |||| Sbjct 282656 TCAGGGGTGAAAACCTTGGTCTCACCCTTGTACTCGACCTGAATCTTTGGCTTTCCACCA 282715 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAA 282662 || | | || || || ||||| | |||||||| || |||| | || | | Sbjct 282716 ACGTCGACCACCTTGAAAGGCCAGTGCTTCATATCGCCCTG--GACTTCAGCATCGCTGA 282773 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTT 282722 | | ||||||||| | || || |||||||| | ||| ||||| || || | ||||| | Sbjct 282774 ACTTTCTACCAATGAGTCTCTTGGCATCAAAGACAGTGTTGGTAGGGTTCATGGCAGCCT 282833 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 282782 | | ||||| || || || |||||| | || | || || |||| || || ||||| | Sbjct 282834 GGTTCTTGGCGGCCTCACCGATCAGACGCTCGCTGTCAGTGAATGCCACGTAAGATGGCG 282893 Query 282783 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842 | || | ||| ||||| ||||| |||| ||| ||||| | | | ||| | ||||| | Sbjct 282894 TAGTTCTATTTCCTTGGTCATTTGCAACAATCTCAACCCTCTCTTGTTGGAAGACACCAA 282953 Query 282843 CACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | ||| | || ||||| | |||||| || |||||| Sbjct 282954 CGCAAGAGTATGTGGTTCCGAGATCAATTCCGATAGCA 282991 >seq2 Length=2777425 Score = 102 bits (112), Expect = 6e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||||||| || || | |||||||| || || || || | ||||| | ||| || Sbjct 207319 TTGTCAAGACCGTAGGCGATGGCAGCAGCGGTAGGCTCGTTGACGATTCTAAGAACGTTC 207260 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | || ||||| || ||||| ||||| || | ||||| || |||||| Sbjct 207259 AATCCGGCAATGGTACCGGCATCCTTGGTGGCCTGTCTCTGGGCGTCGTTGAAGTATGCA 207200 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 |||||||| | || || | ||| || | ||||| | || | || | || ||| Sbjct 207199 GGAACAGTGACCACAGCGTGTGTCACCTTCTTTCCGAGGTAGTCCTCGGCAATCTGCTTC 207140 Query 282515 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGG 282563 || |||| ||||||| | || ||||| || |||| || ||||||| Sbjct 207139 ATCTTACCCAAAATCAAGGCCGAGATTTGCTCCGGAGTGTACTGCTTGG 207091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629663563390