Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 seq3 123 2e-23 >seq4 Length=1514682 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| || | || |||||||||| Sbjct 1333634 AAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCGAGC 1333575 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || | ||||||||| ||||| || || |||||||| |||| Sbjct 1333574 TGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGGATC 1333515 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||||| | |||| ||||||| | |||||| |||| ||||| ||| || ||| Sbjct 1333514 TTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCG 1333455 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || ||||||||||||||| Sbjct 1333454 GTCAGGGTCTTGACGAAAATCTGCATG 1333428 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | |||||| || || | || || || |||||||| || ||||| |||||||| Sbjct 89440 TCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTA 89499 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||||| | |||| ||||| | || ||| || |||| |||| | Sbjct 89500 TCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATG 89559 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || || ||||| ||||||||| Sbjct 89560 GTCTTACCTGTGAGGGTCTTGACGAAGATCTGCATG 89595 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 116475 CGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACA 116534 ||| |||||| | ||| ||||| |||| || |||||| ||||| || |||||| || Sbjct 1112021 CGGATTCCACATCCACACTTTTGGTGACAACACCAACGGTTGCACGTCTGCCGGCCCTCA 1111962 Query 116535 CTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGA 116594 ||||||||| |||| || |||||| || || | || | | || | |||||||| || Sbjct 1111961 CTTCAACCCATTCGGCAAGACCCACGGTGCTCCAACCGACACTGTGAGACACGTCGGAGA 1111902 Query 116595 CCTGGGCAACAT 116606 | |||| ||||| Sbjct 1111901 CTTGGGAAACAT 1111890 >seq3 Length=1705961 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | ||| |||||| | |||||| | Sbjct 1462826 GTCGACTCCTTCTGGATGTTGTAGTC--CGAAAGGGTACGGCCGTCCTCCAACTGCTTAC 1462769 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || | ||||||||| || ||||| || |||||||| |||||| |||| Sbjct 1462768 CAGCGAAGATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTCTGCT 1462709 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | ||| || |||| ||||| || || ||||| || | Sbjct 1462708 TGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGGG 1462649 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 1462648 TTTTAACGAAAATCTGCAT 1462630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420709358600