Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 2e-23
seq3 87.8 1e-12
>seq4
Length=1514682
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | ||||| || |||||| ||||| || |||||||| || ||
Sbjct 88911 ACCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGA 88970
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || || | || ||||| || || |||||||| || | ||| ||||| ||| | ||
Sbjct 88971 AAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 89030
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| || || || ||||| || |||| ||| | |||||| ||||| |
Sbjct 89031 GATACCTTCCTTATCTTGGATCTTCTGCTT-GACATTGTCAATGGTGTCCGAAGATTCGA 89089
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | |||||| || ||||| || | || || || ||||||||||||
Sbjct 89090 CCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCATA 89139
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | | ||||| || || || ||| ||||| ||||||||||||||
Sbjct 89367 ACCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGA 89426
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | || ||||| || || |||||||| || | ||| ||||| ||| | ||
Sbjct 89427 AAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 89486
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| || || || || || || || | ||| | |||||| || || |
Sbjct 89487 GATACCTTCCTTATCCTGGATCTTTTGCTT-GACGTTGTCAATGGTGTCTGAGGACTCAA 89545
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || |||||||| | || || || |||||||||||
Sbjct 89546 CCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | | | |||||| || || ||| ||| || || |||||||| || ||
Sbjct 89139 ACCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 89198
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | |||| ||||| || || || ||||| || | | |||||| ||| | ||
Sbjct 89199 AAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGG 89258
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701
| || || || || || ||||| || | || | |||||| || |||||
Sbjct 89259 AATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCAC 89318
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| ||||| || ||||| || || || || || ||||||||||||
Sbjct 89319 TTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 89367
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || || || || || |||||||| || || || || | | || |||
Sbjct 88702 ACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCTCC 88761
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
|| || || ||||| || || | ||| ||||| ||| | || | |||||| || ||
Sbjct 88762 AACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGG 88821
Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720
|| ||||| || | || | ||||||| || ||||| |||| ||||| || |||
Sbjct 88822 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCTTA 88881
Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| || || || || || ||||||||||||
Sbjct 88882 CCAGTCAAGGTCTTGACGAAGATCTGCATA 88911
>seq3
Length=1705961
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||||||||||| | | ||||| || ||||| ||| || || |||||||| || |
Sbjct 1462858 CACCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 1462799
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || || || |||| ||||| || || || || || || | | |||||| || | |
Sbjct 1462798 AAAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTG 1462739
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || || ||||| || ||||| || || | ||| | ||||||| || ||
Sbjct 1462738 GGATTCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATGGTGTCGGAAGACTCA 1462680
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | |||||||| || || || | ||||| || || ||||||||
Sbjct 1462679 ACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCAT 1462630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703939908800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |