Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq4 114 3e-20 seq3 114 3e-20 >seq1 Length=2842153 Score = 123 bits (136), Expect = 6e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 |||||||||||||| ||||| || ||||| ||| | || ||| |||| ||||||| | Sbjct 871051 GCGTCCTTGTAGACCATGAATGGAGTACCAGTCTCGGTCTGGGCCTCCAAGATGTGGTAC 870992 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||||| || | |||| ||| | | ||| || ||||||||||| ||| Sbjct 870991 CACAGCTTCTGGGCCTTGATGGTACGTCTTCCACGTCCCTCGCGCTCGTATCTCTCGTAG 870932 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 || |||||| || | ||||| | ||| |||||| || || ||| ||| | ||| Sbjct 870931 AGACGTTCGAACTCGTCTCCGTAGACATCGGAAAGACCTGGGGCCTCCGATGGAGAGAAG 870872 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCA 173339 ||| |||| | | || |||||| | ||||||||||||||| | | |||| Sbjct 870871 AGAGTCCACGTGGAGTTGGCCTCGACACGCTTCATGAAGAGGTCAGGAATCCA 870819 >seq4 Length=1514682 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || || ||||| | || || || || ||| Sbjct 89591 CAGATCTTCGTCAAGACCCTCACAGGTAAGACCATCACACTCGAGGTTGAGTCCTCAGAC 89532 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||||||||||| || || || ||||| || || ||| ||| Sbjct 89531 ACCATTGACAACGTCAAGCAAAAGATCCAGGATAAGGAAGGTATCCCACCAGACCAGCAA 89472 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| ||||||||||| ||||| || || | ||||||||||| || Sbjct 89471 CGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCCGATTACAACATC 89412 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || |||||||| || ||| | ||| | ||| Sbjct 89411 CAAAAGGAGTCTACGCTCCACTTGGTTCTCAGA 89379 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| || ||| Sbjct 88907 CAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCCGAC 88848 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || ||||| || || ||| ||| Sbjct 88847 ACCATCGATAACGTCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCAGCAA 88788 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| ||||||||||| ||||| || || | | || |||||| || Sbjct 88787 CGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAACATC 88728 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || ||||| || ||| | || | |||||| || Sbjct 88727 CAGAAGGAATCTACACTCCACTTGGTCCTTAGACTTAGA 88689 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || || ||| ||| ||| Sbjct 89135 CAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACGCTCGAGGTCGAATCTTCGGAC 89076 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||||| ||||| ||||| || ||||| || || ||| ||| Sbjct 89075 ACCATTGACAATGTCAAGCAGAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAGCAA 89016 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| ||||||||||| ||||| |||| | | || |||||| | Sbjct 89015 CGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGGACCCTTTCTGACTACAACATT 88956 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||||||| || ||||| ||| | ||| | ||| Sbjct 88955 CAGAAAGAATCCACTCTCCACTTGGTTCTCAGA 88923 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| || ||| Sbjct 89363 CAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCCGAC 89304 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || ||| || ||| || Sbjct 89303 ACTATCGATAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCAGCAG 89244 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| || || |||||||||||||| || || || | | || |||||| || Sbjct 89243 AGACTTATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTTTCAGACTACAACATC 89184 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || || ||| | || | ||||| Sbjct 89183 CAGAAGGAGTCCACCCTCCACTTGGTGCTTAGACT 89149 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || ||||| ||| ||| Sbjct 1333432 CAGATTTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 1333491 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||||| ||||| || || || || |||||| || ||| || Sbjct 1333492 ACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 1333551 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||||||||| |||||| | || || || || ||| | | || |||||| | Sbjct 1333552 AGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAACATT 1333611 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || || ||| | || | ||||| Sbjct 1333612 CAGAAGGAGTCCACCCTCCACTTGGTCCTTAGACT 1333646 >seq3 Length=1705961 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| |||||||| | || || || ||| ||||| | || Sbjct 1462645 AAAACCCTTACCGGAAAGACGATCACCCTCGAGGTTGAGTCTTCCGACACCATTGACAAC 1462704 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||| || || || || ||||| || ||| || |||||||||||| Sbjct 1462705 GTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAGCAGAGACTTATCTTC 1462764 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| || || | || | | || |||||| ||||||| ||||| Sbjct 1462765 GCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCG 1462824 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| | ||| ||||||| Sbjct 1462825 ACTCTCCACTTGGTTCTGAGACT 1462847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820572868815