Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 181 2e-39 seq1 141 1e-27 >seq4 Length=1514682 Score = 181 bits (200), Expect = 2e-39 Identities = 373/544 (69%), Gaps = 18/544 (3%) Strand=Plus/Minus Query 1455741 ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG-ATATGGGAAATGTACCAAAAAGGC 1455799 |||| |||||| ||||||| ||| ||| |||| || ||||| |||||| || ||||| Sbjct 729302 ACCGGTTTGTCATGTTCCCTATCAAGTAC-AGCGACATCTGGGAGATGTAC-AAGAAGGC 729245 Query 1455800 CGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGT 1455859 ||||||||| || |||||| |||||||| ||||| | || | || ||||| Sbjct 729244 CGAGGCCTCTTTCTGGACCACCGAGGAGATCGACTTGTCTAAGGATCTGATCGACTGGAA 729185 Query 1455860 GTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCG 1455916 | | ||| || | ||||| | | |||||| || || ||||| || || ||||| Sbjct 729184 CACCAAGTTGAACGCCAACGAGAGATACTTCATCTCGCGTGTGCTCGCATTCTT-CGCCG 729126 Query 1455917 CCAGCGATGGCATCGTGGCCGAGAACCTG-GCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 | ||| || ||||| | ||||||| || ||| | ||| | | ||||| || || Sbjct 729125 CTTCCGACGGTATCGTCGACGAGAACTTGTGCCAGAA-CTTCACTACTGAGGTTCAGATG 729067 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 |||||||| ||| || ||||| ||||||||| | || ||||||||||| || || Sbjct 729066 CCAGAGGCCCGTGCCTTCTACGGCTTCCAGATCATGGTGGAGAACATCCACTCCGAGACT 729007 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||||| | ||||||||||||||| ||| ||| |||| || || | ||| Sbjct 729006 TACTCCGTGCTGATCGACACCTACATCACCGACAAAAGCGAGGCCAACTACTTGTTTGAG 728947 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT---C 1456152 |||||||| | | || | | | | | |||||| |||||| | | ||||| Sbjct 728946 GCCATCGAGAACATCCCACCTATCAAGGAGAAGGCCCTCTGGGCCGTCAGATGGATGGAG 728887 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCA 1456211 |||||||| | ||| || || ||||| || ||| || || | | |||| || | Sbjct 728886 AACAAGGACGCCCTTTAC-----GCTGAGCGTCTGATCGCCTACGCTGCCATCGAAGGTA 728832 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||||| || ||| | ||||| |||||||||||| | || |||||||| | Sbjct 728831 TCTTCTTCTCAGGATCGTTCGCTTCGATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCAG 728772 Query 1456272 GTCT 1456275 |||| Sbjct 728771 GTCT 728768 >seq1 Length=2842153 Score = 141 bits (156), Expect = 1e-27 Identities = 204/288 (71%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| | ||||| || |||| || || || || ||||| || || || Sbjct 870398 CATGTCGGAGCGTTACTTCACGCACGCTTCGCCAACTCTGTTCAACGCCGGTACTCCACG 870457 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || || | ||||| ||||| || | | |||||||| || || ||||| || ||||| Sbjct 870458 TCCTCAAATGTCGTCTTGCTTCTTGGTTGCCATGAAGGAGGACTCCATCGAAGGTATCTA 870517 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || || | |||||||| || |||||||||||| | ||||| || |||||||| | Sbjct 870518 CGATACTTTGAAGCAGTGTGCTCTCATCTCCAAGACCGCCGGTGGAATCGGTTTGCACAT 870577 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | || ||| | ||| | ||| | || || |||||||| |||||||| | Sbjct 870578 CCACAACATCCGTGCCACTGGCTCTTACATTGCCGGTACCAACGGTACTTCCAACGGTAT 870637 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | || ||| | || || || ||| ||||||| || ||||| ||||| Sbjct 870638 CATTCCAATGGTCCGTGTCTTCAACAACACGGCCCGTTACGTGGACCA 870685 Score = 105 bits (116), Expect = 1e-16 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||||||| ||||| || | | ||| ||| || || Sbjct 2499665 ATCTACAAGGTCCTCAAGCAGACCCACCCAGACACTGGT-----ATCTCCCAGAGAG-CC 2499718 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||||||||||||||| |||| | |||| ||| |||||| | Sbjct 2499719 ATGTCGATCATGAACTCGTTTGTCAACGACATCTTCGAGAGAATCGCCACTGAGGCC--T 2499776 Query 725031 C---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 | || || ||| | ||||||| || ||| | || ||||||||||| ||| Sbjct 2499777 CCAAGCTTGCCGC-TTACAACAAGAAGTCTACCATCTCTGCCCGTGAGATCCAGACTGCC 2499835 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || ||| | | || || || || | ||||||||| || ||||| |||| Sbjct 2499836 GTCAGACTCATCCTCCCAGGTGAGCTCGCTAAGCACGCCGTTTCTGAGGGTACCA 2499890 Score = 104 bits (114), Expect = 3e-16 Identities = 178/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT-GCCCAACCGGGTGACCATTGATA 263230 ||| |||||| ||| |||||||||||||||| | ||||| ||| | ||| || | Sbjct 871859 CGAACTCAAGAAGATCTACAAGACCGTGTGGGAGATCTCCCAAAAGGG-AATCATCGACA 871917 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| |||||| | | |||| || |||||| | ||||| | ||| | ||||| Sbjct 871918 TGGCCGCCGACAGAGGTGCCTACGTTGACCAGTCCGAGTCGATGAACATCCACCTCAAGT 871977 Query 263291 ACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGA 263350 || || | | ||||| ||||||||| ||||| ||| ||||| |||| Sbjct 871978 CTCCAACCATGGGTAAGATCACCTCGATGCACTTCTATGGTTGGAAGAAGGGCCTTAAGA 872037 Query 263351 CTGGCATGTACTATCTGCGCACCC-GGC--CCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| |||||||| ||||| |||| ||| ||||||| |||||| || ||||| ||| Sbjct 872038 CTGGTATGTACTACCTGCGTACCCAGGCTGCCGCTGC---CGCCATCCAGTTCACTGTCA 872094 Query 263408 ATCAGGCGATGGC 263420 | |||| | |||| Sbjct 872095 ACCAGGAGTTGGC 872107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809753222430