Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 seq1 96.9 5e-15 >seq4 Length=1514682 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||||||||||||||| || | |||||||||||| | || | ||||| || || || Sbjct 728707 TAAGCAGGCGAAGTCGGTGTGCAAGCCCTCATCTCTGCAGATGAGCTCGTTGGAGAAGGT 728766 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 ||| || ||||| ||||| | ||| |||||||| || || | ||| || ||||| || || Sbjct 728767 GAGACCTGGCATGAGACCTCTCTTCTTGAGCCAGAAGATCGAAGCGAACGATCCTGAGAA 728826 Query 39733 GAAGATGCCTTC 39744 |||||| ||||| Sbjct 728827 GAAGATACCTTC 728838 >seq1 Length=2842153 Score = 96.9 bits (106), Expect = 5e-15 Identities = 201/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 69613 TCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 || || ||||| ||||| ||| || | |||||||| || || || || || || Sbjct 1668696 TCAGGGATCCATAGAGC-ATAGAACATATCTCTGGCCCTCAAGTCCTCTTTACCATAGTT 1668754 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731 ||| || | ||||| || | | ||||||| |||||||||||| | ||| || Sbjct 1668755 TTTCTTCATGTCGAGGAATTGTAAGATATCAGCATGCCATGGTTCCAAGTATGCACAGAT 1668814 Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791 | |||| |||| | | || ||||| ||||| | ||| | || || |||| | |||| Sbjct 1668815 GGCTCCAGGTCTTCTGTTGCCTCCTTGATCAACGTACTTAGCCGTTGTATTGAACACTCG 1668874 Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 ||||||||| |||||| | ||| || || ||||| || || ||||| || Sbjct 1668875 CAGCATCGGTGCAATACCGCTGCTCACACCGTTAGTGCCAGAGATGTAGCTTCCAGCAGC 1668934 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 ||||| ||||| ||| | ||| |||||||||| ||| ||||| | ||||| Sbjct 1668935 TCGAATGTTACTGATATGAACACCAATTCCTCCTGATGCTTTTGAGATCATTGCACA 1668991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908671204600