Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 291 2e-73 seq4 141 3e-28 seq3 114 4e-20 >seq1 Length=2842153 Score = 291 bits (322), Expect = 2e-73 Identities = 965/1492 (65%), Gaps = 49/1492 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||| | || || || || ||||| |||| ||| | ||| | || | Sbjct 282990 GCTATCGGAATTGATCTCGGAACCACATACTCTTGCGTTGGTGTCTTCCAACAAGAGAGG 282931 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || |||||||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 282930 GTTGAGATTGTTGCAAATGACCAAGGAAATAGAACTACGCCATCTTACGTGGCATTCACT 282871 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| |||| ||||| | || || || || ||||| || || | || Sbjct 282870 GACAGCGAGCGTCTGATCGGTGAGGCCGCCAAGAACCAGGCTGCCATGAACCCTACCAAC 282811 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTT------TTCTGACAAATCTACA 349432 || || |||||||| ||| |||| |||||||||| || | |||| | || Sbjct 282810 ACTGTCTTTGATGCCAAGAGACTCATTGGTAGAAAGTTCAGCGATGCTGA--AGTC---- 282757 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || ||| | || || | ||||| | || || | | |||| || |||| Sbjct 282756 CAGGGCGATATGAAGCACTGGCCTTTCAAGGTGGTCG---ACGTTGGTGGAAAGCCAAAG 282700 Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCA 349549 ||| |||| || || || ||||| || || |||| |||| || || || || || Sbjct 282699 ATTCAGGTCGAGTACAAGGGTGAGACCAAGG---TTTTCACCCCTGAGGAGATCTCGTCT 282643 Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 |||||| | || |||||||| | |||||| || || | ||||| | || | ||| Sbjct 282642 ATGGTTCTCTCCAAGATGAAGGAGACTGCTGAGGCTTACCTCGGTGAGAAGGTCAATGAC 282583 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | ||||| ||||| || || || || ||||| | || || || || || Sbjct 282582 GCCGTTGTCACTGTCCCAGCTTACTTCAACGACTCCCAGAGACAGGCTACCAAGGACGCC 282523 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | ||| | || | || || | ||||| |||||||| || || ||||| || ||| Sbjct 282522 GGTACCATCACTGGAATGAACATTATGAGAATTATTAATGAGCCTACCGCTGCTGCCATT 282463 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaa---------aaTATTCTTATTTTT 349780 || || || ||||| || | | ||||| | || || ||| | || || Sbjct 282462 GCTTACGGTCTTGACAAGAAG---GACCAGGTTAAGGGCGAGCAGAACATTTTGATCTTC 282406 Query 349781 GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA 349840 ||| | ||||| |||||||| ||||| || || || | | || || || || || || Sbjct 282405 GATCTTGGTGGAGGTACTTTCGATGTTTCTCTGCTTTCTATCGACGAAGGTATCTTCGAG 282346 Query 349841 GTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTT 349900 || || || || |||||||| || || | || || || || |||||||| | | || Sbjct 282345 GTGAAGGCCACCGCTGGTGACACCCACTTGGGAGGTGAGGACTTTGATAACAGATTGGTG 282286 Query 349901 TCGCATTTTGTT--AAAGAATTTAAGCGTCAAGCTAAAATTGA---TATTGGAGATAATC 349955 | ||| | | || || |||||| | | || | || || |||| || | Sbjct 282285 AC--ATTCTTCTCCAACGAGTTTAAGAGAAAGTACAAGAAGGACCTTACTGGA---AACC 282231 Query 349956 CTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTA 350015 ||||| | | | || ||||| || || || | || ||| | | | || || Sbjct 282230 AGAGAGCTCTCAGAAGACTGAGAACCGCCTGCGAGAGAGCCAAGAGAACTCTTTCCTCCT 282171 Query 350016 CTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTA 350075 ||||||| ||||||||||| || || || || || || | || |||| | |||| Sbjct 282170 CTACCCAGACCTCTATTGAGATCGACTCCCTCTACGAAGGTATCGACTTCTACACTTCTA 282111 Query 350076 TTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTG 350135 | || | || | || || || | || || || || ||| | || | | ||| | Sbjct 282110 TCACCAGAGCCAGATTCGAGGAGCTCTGCGCTGACCTCTTCAGATCCACTCTCGCTCCAG 282051 Query 350136 TGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAG 350195 | || || || | | ||| | || || ||| |||| | ||||| | || | | Sbjct 282050 TCGAGAAGGTTCTCAGAGACTCCAAGTTGGACAAGTCTCAGGTCGATGAGATCGTCCTCG 281991 Query 350196 TTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCA 350255 |||| |||||||| ||||| || || || || || | | || || || || | Sbjct 281990 TTGGAGGTTCTACCCGTATCCCTAAGGTCCAGAAGCTCGTTAGCGACTTCTTCTCCGGAA 281931 Query 350256 AAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGG 350315 | || || | || || || || ||||| || || || || |||||||| || |||| Sbjct 281930 AGGAGCCGAACAAGTCCATCAACCCTGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGG 281871 Query 350316 CATCTATTTTATCTGGAAATAAGAGTTCT---AAAATTGATGATCTATTACTACTAGATG 350372 | | ||| | ||||| | | | ||| || | | || | | | || |||| Sbjct 281870 CTGCCATTCTCTCTGG---TGACACCTCTGAGAAGACCCAGGACTTGCTCTTGCTTGATG 281814 Query 350373 TAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTA 350432 | |||||||| || || || | || ||| |||||| || ||||| || || || | Sbjct 281813 TCACTCCACTCTCTCTCGGTATCGAGACTGCTGGTGGTGTCATGACCAAGCTCATCCCAA 281754 Query 350433 GAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGC 350492 |||| |||| | || || ||||| | | || ||||| | || || || |||| Sbjct 281753 GAAACTCTACTATCCCATGCAAGAAGTCAGAGATCTTCTCTACCTACGCTGACAACCAGC 281694 Query 350493 CAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAAC 350552 ||| || ||||| || || || ||||| | || | || || || || || | Sbjct 281693 CAGGTGTCTTGATTCAGGTCTTCGAGGGTGAGAGAACTAGAACCAAGGACAACAACTTGC 281634 Query 350553 TTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAG 350612 |||| | ||| || | || ||| |||||| || ||||| |||||||||||||| | Sbjct 281633 TTGGTAAGTTTGAGCTTACTGGAATCCCACCAGCCCCAAGAGGTGTTCCTCAGATTGAGG 281574 Query 350613 TCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || | ||||| ||||| | || || || || || ||| |||| ||||| || Sbjct 281573 TCACCTTCGACATTGACGCCAACGGAATCTTGAACGTTTCCGCCGTTGAGAA 281522 >seq4 Length=1514682 Score = 141 bits (156), Expect = 3e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | ||||| ||||| | || || |||||||| ||||| || || ||||| Sbjct 89364 CATACCACCTCTCAATCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATC 89423 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct 89424 GGAAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGG 89483 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 || || ||||| |||||||| || ||| || || || || ||||| | || || | | Sbjct 89484 TGGGATACCTTCCTTATCCTGGATCTTTTGC-TTGACGTTGTCAATGGTGTCTGAGGACT 89542 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || ||||| | ||||| || || || || || || || |||||||| Sbjct 89543 CAACCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | ||||| ||||| | || ||||| || ||||| ||||| || || || Sbjct 88908 CATACCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTC 88967 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || | || || || |||||||| ||||||||||| || || Sbjct 88968 AGAAAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGG 89027 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| ||||| || || || || ||||| ||||| | || || | ||| Sbjct 89028 TGGGATACCTTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTGTCCGAAGATTC 89087 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 89088 GACCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | ||| || || | || || || ||||| || || || || || || Sbjct 89136 CATACCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 89195 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||| || ||||| | || || ||||||||||| || | ||||| || || Sbjct 89196 TGAAAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGG 89255 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || || || ||||| || | || || | || Sbjct 89256 TGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTC 89315 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || | |||||| || || | || || || || |||||||| Sbjct 89316 CACTTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366 Score = 104 bits (114), Expect = 7e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || ||||| | | ||| || || | || || || ||||| || ||||| || || ||| Sbjct 1333658 ATTCCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCA 1333599 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | |||| || || || || || || || || ||||| || | ||||| || ||| Sbjct 1333598 GAAAGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGA 1333539 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 |||||||| || || ||||| || || || || || ||||| | || || | || Sbjct 1333538 GGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCC 1333479 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 1333478 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || ||||| || || || || || || || || | |||| ||||| | Sbjct 88701 GACCAAG-TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCT 88759 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | | || || || || ||||| ||||||||||| || || || || ||||| ||||||| Sbjct 88760 CCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCT 88819 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || ||||| || | || || | || |||||||| || | ||||| Sbjct 88820 GGATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCT 88879 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || | || || || || |||||||| Sbjct 88880 TACCAGTCAAGGTCTTGACGAAGATCTGCAT 88910 Score = 91.5 bits (100), Expect = 4e-13 Identities = 449/702 (64%), Gaps = 17/702 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTT--GGCAAAAT-GAT 349255 ||||| || |||||| | || || || || || |||||||| || | | ||| | | Sbjct 259690 GCTATTGGTATCGATCTCGGAACCACGTACTCGTGTGTTGCCGTCTATGACAAGACCGGA 259631 Query 349256 CGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 |||| ||||| ||||| || || |||||||||||||| || ||||| || || || || Sbjct 259630 GGTGTGGAAATCATTGCTAACGAGCAAGGTAACAGAACCACTCCATCGTATGTCGCTTTC 259571 Query 349316 ACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA 349375 || | ||| | | | || ||| |||| || || || || ||| || |||| Sbjct 259570 ACTCCAGAGGAGAGACTCGTCGGAGATGCTGCCAAGAACCAGGCCGCTTTGAACCCAACC 259511 Query 349376 AATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACAC 349433 || || || || || |||||||| | ||||| | | || |||| || | || Sbjct 259510 AACACTGTGTTCGACGCTAAGCGTATGATTGGCCGTGGATTCGCTGATGAGAACATCCAG 259451 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTA 349493 || || | || || ||||| | ||| || | || | || || |||| | Sbjct 259450 AA--GGACATGAAGACTTGGCCTTTCAAGGTTATT---GACGAGGCTGGAAACCCAAAGA 259396 Query 349494 TTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | |||| || || || || || || || || | || | || || || || ||| Sbjct 259395 TCCAGGTCGAGTACCTCGGAGAGACCAAGAC-CTTCTCTCCACAGGAGATCTCCTCGATG 259337 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 ||||| || |||||||| | || || || | | || | |||| | || Sbjct 259336 GTTTTGACCAAGATGAAGGAGACCGCCGAGGCCAAGATCGGCCAGCCAGTCGAGAAGTCT 259277 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || ||||| || |||||||| || || || || ||| | || || || || || || Sbjct 259276 GTCATTACCGTGCCAGCCTACTTCAACGACGCTCAGAGACAGGCCACCAAGGACGCCGGT 259217 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 |||| | || | || ||| | ||||| || || || || || || || || || || Sbjct 259216 GCCATTTCTGGTCTCAACGTTTTGAGAATCATCAACGAGCCAACCGCCGCCGCTATCGCC 259157 Query 349733 TATGGGCT-TGATAAAATGAGT--GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || | | | ||| || | || | | | || || || || ||| | ||| Sbjct 259156 TACGGTCTCGGCTCTGGTAAGTCCGAGAAGGAGAGACACATCCTGATCTTCGATCTCGGT 259097 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG-GGAATTTTTGAAGTTAAAGC 349848 || |||||||| ||||| || || || || | ||| | || | || || || || Sbjct 259096 GGAGGTACTTTCGATGTCTCCCT-CTTGAACATCAAGGGTGGTGTCTTCACTGTCAAGGC 259038 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || |||||||| || || | |||||| | || |||||||| Sbjct 259037 CACCGCTGGTGACACTCACTTGGGTGGACAGGACTTTGATAA 258996 >seq3 Length=1705961 Score = 114 bits (126), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 140509 TACCACCACGT---AATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAAT 140565 ||||||||| | | ||| ||||| | || ||||| ||||| || || || || || | Sbjct 1462861 TACCACCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGT 1462802 Query 140566 CAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 | || | || || || || || | || || ||||| ||||| || | ||||| |||| Sbjct 1462801 CCGAAAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAG 1462742 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | || ||||| || || ||||| || || || || || ||||| | || || | | Sbjct 1462741 GTGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACT 1462682 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || | ||||||||||| || ||||| || ||||||||||| Sbjct 1462681 CAACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCAT 1462630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254108787045