Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016-
12-06] 15 sequences; 9,213,885 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 251 8e-62
>seq1
Length=2842153
Score = 251 bits (278), Expect = 8e-62
Identities = 313/429 (73%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329
||||| |||||||| ||||||| ||||||||||| ||||| | ||||| ||||||
Sbjct 870411 TACTTCACGCACGCTTCGCCAACTCTGTTCAACGCCGGTACTCCACGTCCTCAAATGTCG 870470
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||| |||| || |||||||| ||||| ||||| || |||||||| || | |||
Sbjct 870471 TCTTGCTTCTTGGTTGCCATGAAGGAGGACTCCATCGAAGGTATCTACGATACTTTGAAG 870530
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449
||||||| | |||||||||| | ||||| |||||| | ||| | ||| |||||
Sbjct 870531 CAGTGTGCTCTCATCTCCAAGACCGCCGGTGGAATCGGTTTGCACATCCACAACATCCGT 870590
Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509
|| | ||| | || || || ||||| || | || ||| | || ||| ||
Sbjct 870591 GCCACTGGCTCTTACATTGCCGGTACCAACGGTACTTCCAACGGTATCATTCCAATGGTC 870650
Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569
|| |||||||||||||||||||| ||||| |||| |||||| ||| | || |
Sbjct 870651 CGTGTCTTCAACAACACGGCCCGTTACGTGGACCAAGGTGGTAACAAGAGACCTGGTGCC 870710
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
||||||||||||||||||| |||||||| ||||| | || | ||| | |||
Sbjct 870711 ATCGCCATCTACCTCGAGCCATGGCACGCTGACATCTTCGACCTCACCGACATCCGTAAA 870770
Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689
|| || ||| | || ||||| || ||||||| |||| |||| ||||||||||| |||
Sbjct 870771 AACCACGGTAAGGAGGAGATCCGTGCCCGTGACTTGTTCCCAGCCCTGTGGATTCCTGAC 870830
Query 53690 CTCTTCATG 53698
|||||||||
Sbjct 870831 CTCTTCATG 870839
Score = 140 bits (154), Expect = 4e-28
Identities = 525/816 (64%), Gaps = 22/816 (3%)
Strand=Plus/Plus
Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186
||| | ||||| ||| ||||| | ||||| ||| ||| |||||||| | || |||
Sbjct 871251 GTTCTTACTCGTAACTTGAACTGTGTCATTGACCGGAACTACTACCCAGTTCCAGAGGCT 871310
Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246
||| || ||| | | || | || | || ||||||| || || ||||||||||
Sbjct 871311 CGCCGTTCTAACATGAGAAACAGACCTGTTGCTCTCGGTGTGCAAGGTTTGGCCGACACT 871370
Query 55247 TTCATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAA---CCAGGAC 55303
||| | || | | |||| |||||||| | || || || | || ||||
Sbjct 871371 TTCTTCCTGTGCCGTCTGCCATTCGACTCCCCAGAGGCCCGTGAGTTGAATATCCAG--- 871427
Query 55304 ATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCG 55361
|||||| || | ||||||| ||||| | |||| |||| | |||| | |||
Sbjct 871428 ATCTTCGAGAC-CATCTACCACGCAGCTTTGGAGGCTTCGTCCGAGTTGGCCACCGAGGA 871486
Query 55362 AGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATC 55421
||| | |||||||| | | | |||||||| |||||| | | |||| |||||
Sbjct 871487 AGGTGTG-TACGAGACCTACGAGGGCTCGCCAGCCTCCAAGGGTATCTTGCAGTACGATC 871545
Query 55422 TATGGGGCAAGTCTG-ACCCCATGTTTGACA--------AGTTGAAGCATGACATTCACT 55472
| ||||||||| | || || | || | |||||||| | | || |
Sbjct 871546 TGTGGGGCAAGAAGCCAACCGATCTGTGGGACTGGGATGAGTTGAAGGCTAAGATCGCCA 871605
Query 55473 TGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532
| || || | ||||| || | ||||| ||||||||||| || || || | ||||
Sbjct 871606 AGACCGGACTTAGAAACTCGCTCTTGGTGGCTCCAATGCCAACTGCTTCCACCTCCCAGA 871665
Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592
||||||| |||||||| |||||||| ||||| ||||||||||| ||| | |
Sbjct 871666 TCATGGGTTACAACGAGTGCTTCGAGCCATACACTTCCAACATCTACTCGCGTAGAGTGC 871725
Query 55593 TAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACA 55652
| || |||||||| || ||||| || | || ||| || | | |
Sbjct 871726 TCGCCGGTGAGTTCCAGATCGTCAACCCTTACATGCTCCGTGACTTGGTCGACCTTGGAA 871785
Query 55653 AGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG 55712
||| || || |||| | || | | | || || ||||| | ||
Sbjct 871786 TCTGGGACGATGCTATGAAGAACTACATCATCAGTGATAACGGTTCGATCCAGCACCTTC 871845
Query 55713 AGA---TTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769
| |||| |||||| |||| ||| ||| ||||||||||| | || |||
Sbjct 871846 CTAACGTTCCAGACGAACTCAAGAAGATCTACAAGACCGTGTGGGAGATCTCCCAAAAGG 871905
Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829
| | || |||||| || || | ||||| ||| | ||||||||| |||| ||||||
Sbjct 871906 GAATCATCGACATGGCCGCCGACAGAGGTGCCTACGTTGACCAGTCCGAGTCGATGAACA 871965
Query 55830 TCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889
|| | | || ||| | ||| ||| | | |||||||||||| || || |||||||
Sbjct 871966 TCCACCTCAAGTCTCCAACCATGGGTAAGATCACCTCGATGCACTTCTATGGTTGGAAGA 872025
Query 55890 AGGGACTCAAGACGGGTATGTACTATCTGCGGACCC 55925
|||| || ||||| ||||||||||| ||||| ||||
Sbjct 872026 AGGGCCTTAAGACTGGTATGTACTACCTGCGTACCC 872061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215897397000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |