Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 266 4e-66 seq4 136 5e-27 seq3 136 5e-27 >seq1 Length=2842153 Score = 266 bits (294), Expect = 4e-66 Identities = 818/1254 (65%), Gaps = 51/1254 (4%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 ||||||| |||| ||||||||| |||| || || || || ||| || | ||||||||| Sbjct 871552 CCCCACAGATCGTACTGCAAGATACCCTTGGAGGCTGGCGAGCCCTCGTAGGTCTCGTAC 871493 Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGTGATAAATGCAC 80655 || ||| |||||| ||| |||| ||||| | || ||||| || ||| | Sbjct 871492 ACACCTTCCTCGGTGGCCAACTCGGACGAAGCCTCCAAA---GCTGCGTGGTAGATGGTC 871436 Query 80656 TCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATC 80715 || |||| | |||| | || |||| |||| |||||| | || | || Sbjct 871435 TCGAAGATCTGGATATTCAACTCACGGGCCTCTGGGGAGTCGAATGGCAGACGGCACAGG 871376 Query 80716 ATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT 80775 | ||| ||| |||| || || || |||| || | || | || | | |||| || Sbjct 871375 AAGAAAGTGTCGGCCAAACCTTGCACACCGAGAGCAACAGGTCTGTTTCTCATGTTAGAA 871316 Query 80776 CGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 || ||||| |||| |||||| |||| || ||||| | ||||| ||| || ||| Sbjct 871315 CGGCGAGCCTCTGGAACTGGGTAGTAGTTCCGGTCAATGACACAGTTCAAGTTACGAGTA 871256 Query 80836 ACAACCC----------GTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGG-- 80877 | |||| ||| ||| || ||||| | ||| ||| |||| Sbjct 871255 AGAACCTTGATGATCTGGTGCAACTTCTCAAAGTT---GTAAGAGGAAGATTTGTTGGCG 871199 Query 80878 TTCCCCTTC---ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCT 80934 || ||| | ||||| || || | || | ||| |||| || || ||||| || || Sbjct 871198 TTGTCCTGCTCGACAAAGGCTGGCAAGCAGACGGAAGCCAAGTTACAGACGGCAACTTCC 871139 Query 80935 TCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 || | | | |||| || | || |||||| || |||||||| || ||||||||| Sbjct 871138 TCTGGAGAGGAGTACTCAACAACCTCACAGCACAAGTTGGAAGACTTGATGGTACCCAGG 871079 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || | |||||| |||||| ||||||||||||||||||| |||| | || ||||| ||| Sbjct 871078 TTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGACCATGAATGGAGTACCAGTC 871019 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC--AC--CTTGCG 81110 ||| ||| | || | |||| || ||| | || | ||||||| || ||| | Sbjct 871018 TCGGTCTGGGCCTCCAAGATGTGGTACCACAGCTTCTGGGCCTTGATGGTACGTCTTCC- 870960 Query 81111 GAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGT-CGAACTTGGCACCGTGAAGTT 81169 | | ||| || | | || | |||| | ||| |||||| | | |||| | | Sbjct 870959 --ACGTCCCT-CGCGCTCGTATCTCTCGTA-GAGACGTTCGAACTCGTCTCCGTAGACAT 870904 Query 81170 CAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAG 81229 | | || ||||| ||| || | | || ||| || || | ||| ||| Sbjct 870903 CGGAAAGACCTGGGGCCTCCGATGGAGAGAAGAGAGTCCACGTGGAGTTGGCCTCGACAC 870844 Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 ||||||||| |||||| ||||| ||||| | ||||| ||| ||| || ||||| Sbjct 870843 GCTTCATGAAGAGGTCAGGAATCCACAGGGCTGGGAACAAGTCACGGGCACGGATCTCCT 870784 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | ||| ||||| || | ||| | ||| | |||||| || ||||||||||| | Sbjct 870783 CCTTACCGTGGTTTTTACGGATGTCGGTGAGGTCGAAGATGTCAGCGTGCCATGGCTCGA 870724 Query 81350 GATACACGGCGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAG 81403 | || | |||||| | || |||| || |||| |||| ||||||||||| | Sbjct 870723 GGTAGATGGCGATGGCACCAGGTCTCTTGTTAC---CACCTTGGTCCACGTAACGGGCCG 870667 Query 81404 TCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGA 81463 | ||| || ||||| | ||| || |||||||| | || |||||| ||||| | | Sbjct 870666 TGTTGTTGAAGACACGGACCATTGGAATGATACCGTTGGAAGTACCGTTGGTACCGGCAA 870607 Query 81464 TACGCGACCCCTTGGCGCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTT 81522 | || || |||| || | ||| ||| || || |||||| ||||| | ||| Sbjct 870606 TGTAAGAGCCAGTGGCACGGATGTTGTGGATGTGCAA-ACCGATTCCACCGGCGGTCTTG 870548 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 || || |||||||| | |||| || || || || || |||||| || | |||||| Sbjct 870547 GAGATGAGAGCACACTGCTTCAAAGTATCGTAGATACCTTCGATGGAGTCCTCCTTCATG 870488 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 ||| |||||| || ||||| ||||| | | | ||||| |||||||| ||||| Sbjct 870487 GCAACCAAGAAGCAAGACGACATTTGAGGACGTGGAGTACCGGCGTTGAACAGAGTTGGC 870428 Query 81643 GTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATA 81702 | ||||| |||| ||||| | ||||| |||| || || || ||| | ||| Sbjct 870427 GAAGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTAAGTCTCGAGGACTTTTTCAATG 870368 Query 81703 TCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 | ||| ||| | ||| || || || | ||| | ||||| ||| || ||||| Sbjct 870367 TTGTCCGAGTGGACACCAATGGCAACTCTCATGATCATGTGCTGAGGTCTCTCG 870314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 232/345 (67%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 80714 TCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG 80773 ||||||| ||||| || |||||||| || | || || || ||||| | | |||| | Sbjct 1668166 TCATGAATGTATCAGCGAGTCCCTGAACACCAACAGCCATAGGACGGTGCCTCATGTTGG 1668225 Query 80774 ATCGCTCGGC-CTCCGGAATTGGGTAAA-AGTTATTATCGATGACGCGGTTCAGGTTGCG 80831 | || || | ||| | ||||| |||| | ||||||||| || |||||||| Sbjct 1668226 AGCGA-CGACACTCTTCTAACGGGTACTCAGTTCT-ATCGATGACCTTATTGAGGTTGCG 1668283 Query 80832 TGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAA 80891 || ||| || || | ||| | || ||||||||| | || | | || || Sbjct 1668284 AACTACCACCTTGGTCACCTTATGCAACAGCTTAAAGTCGAACTTGTCGTCGCTGACGAA 1668343 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || |||||| | || || | ||||||||||| || | ||| || || | || Sbjct 1668344 TGTCGGAAGACCCAACGAGGATAGATTGCACACTGCAATCTCATCTTTCGATGAGTATTC 1668403 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| ||||| |||| ||| || |||||||| || |||| ||| || ||||| || || Sbjct 1668404 GACAATTTCACAACACAGATTGGACGACTTAATGGTTCCCAAGTTCTTTTGGTTCGATTT 1668463 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTC 81056 |||||| || |||||||| |||| | || ||||| ||||| Sbjct 1668464 CCGGTTGCATGCATCCTTGTAAAGCATGAATGGAGTACCTGTCTC 1668508 >seq4 Length=1514682 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || |||||||| || || ||||| || || Sbjct 89138 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACGCTCGAGGTCGAATCTTCG 89079 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| || || || || ||||| || || || ||||||||| Sbjct 89078 GACACCATTGACAATGTCAAGCAGAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAG 89019 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| |||||||| | ||||||| || ||||| | ||||| || Sbjct 89018 CAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGGACCCTTTCTGACTACAAC 88959 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || ||||||||||| || Sbjct 88958 ATTCAGAAAGAATCCACTCTCCA 88936 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| || || || ||||| ||||| Sbjct 1333429 ATGCAGATTTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1333488 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || || |||||||||||||||||||||||||||||| Sbjct 1333489 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGAATTCCTCCAGACCAG 1333548 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || |||||||| |||||||| | | || || | ||||| || Sbjct 1333549 CAGAGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCAGAACTCTTTCTGACTACAAC 1333608 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || ||||| ||||| || || Sbjct 1333609 ATTCAGAAGGAGTCCACCCTCCA 1333631 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || || ||||| || || || ||||||||||| Sbjct 89597 ATCATGCAGATCTTCGTCAAGACCCTCACAGGTAAGACCATCACACTCGAGGTTGAGTCC 89538 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 89537 TCAGACACCATTGACAACGTCAAGCAAAAGATCCAGGATAAGGAAGGTATCCCACCAGAC 89478 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || ||||| |||||||| | ||||||| | ||||| | || || Sbjct 89477 CAGCAACGTCTTATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCCGATTAC 89418 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || |||||||||| || || || || Sbjct 89417 AACATCCAAAAGGAGTCTACGCTCCA 89392 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || |||||||| || ||||| Sbjct 88910 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 88851 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| || || ||||| ||||| || || || ||||||||| Sbjct 88850 GACACCATCGATAACGTCAAGCAGAAGATCCAGGATAAGGAAGGTATCCCACCAGACCAG 88791 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || |||||||| | ||||||| | ||||| ||||||| || Sbjct 88790 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACCCTTTCAGACTACAAC 88731 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||| || || || Sbjct 88730 ATCCAGAAGGAATCTACACTCCA 88708 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || |||||||| || ||||| Sbjct 89366 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACAATCACTCTTGAAGTGGAGTCCTCC 89307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || || ||||| |||||||| ||||| ||||||||| Sbjct 89306 GACACTATCGATAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCAG 89247 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||||| | || || | | ||||| ||||||| || Sbjct 89246 CAGAGACTTATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTTTCAGACTACAAC 89187 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||| || || Sbjct 89186 ATCCAGAAGGAGTCCACCCTCCA 89164 >seq3 Length=1705961 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || |||||||| ||||| || || || ||||||||||| Sbjct 1462630 ATGCAGATTTTCGTTAAAACCCTTACCGGAAAGACGATCACCCTCGAGGTTGAGTCTTCC 1462689 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || || ||||||||||||||||| || || |||||| Sbjct 1462690 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAG 1462749 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| | ||||| | |||||||| | ||||| || Sbjct 1462750 CAGAGACTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGTACCCTTTCGGACTACAAC 1462809 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| || ||||| || Sbjct 1462810 ATCCAGAAGGAGTCGACTCTCCA 1462832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310293066800