Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 118 7e-22 seq3 113 3e-20 >seq4 Length=1514682 Score = 118 bits (130), Expect = 7e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||||| ||||| ||| |||||| |||||||| || || ||| Sbjct 1333655 CCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 1333596 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| || || || |||||||| || || | | ||| ||||| || || Sbjct 1333595 AGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGA 1333536 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||||| || || ||| | ||| ||||| |||||| Sbjct 1333535 ATTCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 1333477 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || |||||||| | || || || |||||||||||| || Sbjct 1333476 CTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCATGCTG 1333425 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||||||| | | ||||| ||||| || ||||| || ||||| || ||||| Sbjct 88683 GCCGCCTCTAAGTCTAAGGACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGA 88742 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| | || || | || |||||||| || || | ||| || ||||| || || Sbjct 88743 AAGGGTTCTGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGG 88802 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | || ||||| || |||||| || || ||| || || ||||| | ||||| Sbjct 88803 GATACCTTCCTTATCCTGGATCTTCTG-CTTGACGTTATCGATGGTGTCGGAGGACTCCA 88861 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || || ||||| || || || || || || |||||||| Sbjct 88862 CTTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 88910 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || ||||||||| ||||| ||||| ||||| |||| | || || Sbjct 89386 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCC 89445 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | || ||||||||||| || | ||| || ||||| || || | || ||||| || | Sbjct 89446 AACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGG 89505 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||||| || ||| | ||| |||||| | ||| || || | || || || || Sbjct 89506 ATCTTTTG-CTTGACGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATGGTCTT 89564 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || | || || || || ||||||||| Sbjct 89565 ACCTGTGAGGGTCTTGACGAAGATCTGCATG 89595 >seq3 Length=1705961 Score = 113 bits (124), Expect = 3e-20 Identities = 170/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || ||||| |||||||| |||||| || ||||| || || ||| Sbjct 1462856 CCACCTCTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1462797 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | || ||||| || || || | | ||| ||||| || || Sbjct 1462796 AGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGG 1462737 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||||| || || ||| | ||| ||||| ||| || Sbjct 1462736 ATTCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCGGAAGACTCAAC 1462678 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA-TTGT 34715 || | ||| ||||| || ||||| | ||||| || ||||||||||| |||| |||| Sbjct 1462677 CTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTTGAGTTGT 1462620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729542463495