Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 141 2e-28 seq3 107 4e-18 >seq4 Length=1514682 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | || || |||||||| ||||||||||||||||||| | ||||| || Sbjct 89379 TCTGAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCC 89438 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||| || | || ||||| |||||||| | |||||||| | | ||| |||||||| Sbjct 89439 ATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 89498 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || || || ||||| ||||| | || | | ||||||| ||| || || || || || Sbjct 89499 ATCCTGGATCTTTTGCTTGACGTTGTCAATGGTGTCTGAGGACTCAACCTCGAGTGTGAT 89558 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||| |||||| Sbjct 89559 GGTCTTACCTGTGAGGGTCTTGACGAAGATCTGCAT 89594 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| ||||| | || || ||||| || || ||||||||||| || | | ||| Sbjct 88690 CTAAGTCTAAGGACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAAAGGGTT 88749 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || | || |||||||||||||| | |||||||| | | ||| ||| Sbjct 88750 CTGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCT 88809 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||||| | || | | |||| || ||| ||||||||| Sbjct 88810 TCCTTATCCTGGATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCCACTTCAAGA 88869 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | ||||| ||||||| |||||| Sbjct 88870 GTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 88910 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| ||||| | || || || ||||| || || |||||||| || | | |||| Sbjct 1333649 CTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTT 1333590 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || || || |||||||||||||| ||||||||||| | | ||||| Sbjct 1333589 CTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCC 1333530 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||||| | || | | |||| ||| ||| || || || Sbjct 1333529 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGG 1333470 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||| | |||||| Sbjct 1333469 GTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| || || | || || || ||||| || ||||||||||| || | | ||| Sbjct 89146 CTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAAAGGGTT 89205 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| | || || || |||||||| ||||||||||| | | || || Sbjct 89206 CTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGAATGCCC 89265 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||||| | || | |||| || ||| ||||||||| Sbjct 89266 TCCTTATCCTGGATCTTCTGCTTGACGTTATCGATAGTGTCGGAGGACTCCACTTCAAGA 89325 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || | ||||| ||||||| |||||| Sbjct 89326 GTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366 >seq3 Length=1705961 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | || ||||| ||||| || ||||||||||| || | | || Sbjct 1462850 CTCAGTCTCAGAACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 1462791 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || || || | || || ||||||||||| ||||||||||| | | |||||| Sbjct 1462790 CGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGTCTCTGCTGGTCAGGTGGGATTCCC 1462731 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||||| | || | | |||| ||| ||| || || || Sbjct 1462730 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGG 1462671 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || || || ||||| | |||||| || Sbjct 1462670 GTGATCGTCTTTCCGGTAAGGGTTTTAACGAAAATCTGCATCTT 1462627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820578250065