Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4 176 9e-39 seq3 132 1e-25 >seq4 Length=1514682 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || |||| || | ||| |||||| || ||||||||||||| Sbjct 88911 ACCACCTCTCAATCTGAGAACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGA 88970 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| | || || ||||||||||| | |||||| ||||| || Sbjct 88971 AAGGGTCCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 89030 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||| ||||| ||||||||||| ||| || || | || || |||||||||| ||||| Sbjct 89031 GATACCTTCCTTATCTTGGATCTTCTGC-TTGACATTGTCAATGGTGTCCGAAGATTCGA 89089 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| |||||||| || | |||||| ||||| |||||||| Sbjct 89090 CCTCGAGCGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 Score = 161 bits (178), Expect = 2e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | ||| || | ||||||||| | || || ||||| || Sbjct 88719 TTCCTTCTGGATGTTGTAGTCTGAAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCGAA 88778 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGG 283026 ||| | |||||| ||||| || ||||| ||||| || |||||||| ||| || ||| Sbjct 88779 GATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTCTGC-TTGACGT 88837 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 ||||||| ||||| || | || ||||| |||||||| |||||||| ||||| ||||| | Sbjct 88838 TATCGATGGTGTCGGAGGACTCCACTTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGA 88897 Query 283087 CGAATATCTGCAT 283099 |||| |||||||| Sbjct 88898 CGAAGATCTGCAT 88910 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||| |||| || | ||| || || |||||||||||||| | Sbjct 89139 ACCACCTCTGAGTCTAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 89198 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||| || || | || || || |||||||| | | || ||||| || Sbjct 89199 AAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCTGGTGG 89258 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||| || |||||||| ||| || ||| ||||||||||||| || | || | Sbjct 89259 AATGCCCTCCTTATCCTGGATCTTCTGC-TTGACGTTATCGATAGTGTCGGAGGACTCCA 89317 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 89318 CTTCAAGAGTGATTGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 89366 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| | ||| |||| || | ||| || || || ||||||||||||| | Sbjct 1333655 CCACCTCTCAGTCTAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 1333596 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| ||||| || || || ||||| ||||| | | || ||||| ||| Sbjct 1333595 AGAGTTCTGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGA 1333536 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | || || ||||| |||| || || Sbjct 1333535 ATTCCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGGTGTCGGAAGACTCCAC 1333477 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 1333476 CTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAAATCTGCAT 1333429 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| || | ||| || | ||||||||| | || || ||||||||| Sbjct 89404 TCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCCAACTGCTTACCGGCAAAG 89463 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| ||||| || ||||| ||||| || ||||||||| || ||| | Sbjct 89464 ATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGGATCTTTTGCTTGACGTTG 89523 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || || ||||| ||||| |||||||| || | ||||| ||| Sbjct 89524 TCAATGGTGTCTGAGGACTCAACCTCGAGTGTGATGGTCTTACCTGTGAGGGTCTTGACG 89583 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 89584 AAGATCTGCAT 89594 >seq3 Length=1705961 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || ||||| ||||| | || || || || ||| Sbjct 1462820 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAAG 1462761 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGT 283027 || | | || |||||| || || ||||||||||| |||||||| ||||| ||| | Sbjct 1462760 ATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTT 1462702 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| || || ||||| ||||||||||| || || | || ||||| Sbjct 1462701 GTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAAC 1462642 Query 283088 GAATATCTGCATTTT 283102 ||| |||||||| || Sbjct 1462641 GAAAATCTGCATCTT 1462627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738998829810