Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20JCM_2015000_20[genbank_20GCA_5F001950555.1_202016- 12-06] 15 sequences; 9,213,885 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 seq3 113 4e-20 >seq4 Length=1514682 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| ||||||||||||||| ||||| || || || | |||| ||| Sbjct 1333637 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCG 1333578 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | ||| ||||| | |||| | |||||||||| | Sbjct 1333577 AGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGG 1333518 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| ||| | | | |||||| ||||||||||| | || || || || Sbjct 1333517 ATCTTCTGCTT-GACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 1333459 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| ||||| ||||| ||||||||||||||| Sbjct 1333458 ACCGGTCAGGGTCTTGACGAAAATCTGCATG 1333428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| || ||||||||||| ||||| || ||||| || | || || Sbjct 88930 ACCAAGTGGAGAGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGGGTCCGGCCATCCTCC 88989 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| ||||| || || || || || ||||| | || | | ||||| || | Sbjct 88990 AACTGCTTACCGGCAAAGATAAGACGTTGCTGGTCTGGTGGGATACCTTCCTTATCTTGG 89049 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| || | | | ||||| || || ||||| | ||| || || || Sbjct 89050 ATCTTCTGCTT-GACATTGTCAATGGTGTCCGAAGATTCGACCTCGAGCGTGATAGTCTT 89108 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || ||||| ||||| |||||||| Sbjct 89109 ACCAGTAAGAGTCTTGACGAAGATCTGCAT 89138 >seq3 Length=1705961 Score = 113 bits (124), Expect = 4e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || ||||| || |||| || | |||||| || ||||| Sbjct 1462821 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAACTGCTTACCAGCGAA 1462762 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| ||||| | || | | |||||||||| ||| || ||||| | || Sbjct 1462761 GATAAGTCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 1462703 Query 41791 CGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | || | ||||| ||||| ||||| | || ||||| || || || || || || | Sbjct 1462702 TGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGGGTTTTAA 1462643 Query 41850 CGAAAATCTGCATGTT 41865 ||||||||||||| || Sbjct 1462642 CGAAAATCTGCATCTT 1462627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303913318000