Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq307 268 9e-67 seq250 268 9e-67 seq124 118 1e-21 >seq307 Length=48190 Score = 268 bits (296), Expect = 9e-67 Identities = 602/896 (67%), Gaps = 19/896 (2%) Strand=Plus/Minus Query 15892 TTTAGAAGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTT 15951 |||||| |||||| | ||||||||||| ||| | |||||||| ||||| ||||| Sbjct 40015 TTTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTT 39956 Query 15952 TCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTT 16008 || | || || ||||||||||| ||||| || || |||||| | || ||| | |||| Sbjct 39955 ACCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTT 39896 Query 16009 AGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAA 16068 ||||| || ||| ||||||||| || ||| |||| | |||||||||||| || Sbjct 39895 GT--TACCCAAGGCAAATAA-TAATCTATCAGCAACATATTCAACATATTGACACATCAA 39839 Query 16069 GTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTAT 16128 ||| || || || || | | || |||||||| | || ||| ||| || ||| | Sbjct 39838 GTCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAAC 39779 Query 16129 CACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC---AGACGGTGTATGGTTTAG 16185 |||| ||||| ||| || | | | |||| ||| ||| | || | | Sbjct 39778 ATCAACAGCTTCAACAATAATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAA 39722 Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 ||| |||| | ||| || || || ||||| ||||| ||||| | ||| | ||| Sbjct 39721 GTGGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTC 39662 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 ||||| ||||| || |||||||| |||| || || |||||||| || | |||||| Sbjct 39661 ATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAA 39602 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||| || ||||| ||||| |||| || |||||||| | |||| ||| || || Sbjct 39601 TGAACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 39542 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 ||||||||||| |||||||||| ||||||| ||||| | | ||||| || Sbjct 39541 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 39482 Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 |||| ||||| |||||||| || ||| || || | | ||| || ||||| Sbjct 39481 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 39422 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 | |||| |||||||| || || ||||| || || || || || |||||||| | Sbjct 39421 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 39362 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 | ||| || | | ||| ||||| | |||| ||| || ||| ||| || || Sbjct 39361 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 39302 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGA 16662 ||| ||| ||||| ||||| || || | || ||||||||||| ||| | Sbjct 39301 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTC--A 39244 Query 16663 TGTAA--GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAA 16720 | ||| | | |||||| | |||||||| || ||| |||||||| ||||| Sbjct 39243 TTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAG 39184 Query 16721 AAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| || | || |||||||| | ||||| || |||| |||| || ||||| Sbjct 39183 AAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 39128 >seq250 Length=32566 Score = 268 bits (296), Expect = 9e-67 Identities = 602/896 (67%), Gaps = 19/896 (2%) Strand=Plus/Minus Query 15892 TTTAGAAGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTT 15951 |||||| |||||| | ||||||||||| ||| | |||||||| ||||| ||||| Sbjct 29501 TTTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTT 29442 Query 15952 TCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTT 16008 || | || || ||||||||||| ||||| || || |||||| | || ||| | |||| Sbjct 29441 ACCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTT 29382 Query 16009 AGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAA 16068 ||||| || ||| ||||||||| || ||| |||| | |||||||||||| || Sbjct 29381 GT--TACCCAAGGCAAATAA-TAATCTATCAGCAACATATTCAACATATTGACACATCAA 29325 Query 16069 GTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTAT 16128 ||| || || || || | | || |||||||| | || ||| ||| || ||| | Sbjct 29324 GTCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAAC 29265 Query 16129 CACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC---AGACGGTGTATGGTTTAG 16185 |||| ||||| ||| || | | | |||| ||| ||| | || | | Sbjct 29264 ATCAACAGCTTCAACAATAATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAA 29208 Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 ||| |||| | ||| || || || ||||| ||||| ||||| | ||| | ||| Sbjct 29207 GTGGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTC 29148 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 ||||| ||||| || |||||||| |||| || || |||||||| || | |||||| Sbjct 29147 ATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAA 29088 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||| || ||||| ||||| |||| || |||||||| | |||| ||| || || Sbjct 29087 TGAACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 29028 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 ||||||||||| |||||||||| ||||||| ||||| | | ||||| || Sbjct 29027 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 28968 Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 |||| ||||| |||||||| || ||| || || | | ||| || ||||| Sbjct 28967 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 28908 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 | |||| |||||||| || || ||||| || || || || || |||||||| | Sbjct 28907 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 28848 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 | ||| || | | ||| ||||| | |||| ||| || ||| ||| || || Sbjct 28847 TTTAGCTTCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 28788 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGA 16662 ||| ||| ||||| ||||| || || | || ||||||||||| ||| | Sbjct 28787 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTC--A 28730 Query 16663 TGTAA--GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAA 16720 | ||| | | |||||| | |||||||| || ||| |||||||| ||||| Sbjct 28729 TTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAG 28670 Query 16721 AAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| || | || |||||||| | ||||| || |||| |||| || ||||| Sbjct 28669 AAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 28614 >seq124 Length=102737 Score = 118 bits (130), Expect = 1e-21 Identities = 340/514 (66%), Gaps = 12/514 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||| ||||||||||||| || | ||||| ||||| || ||||| || | || Sbjct 21079 ACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAG 21138 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGT-AGCTGAAAATATCTTA-GAGTACCCCA 16019 |||||||||||||| |||||||| |||||||| | | | |||| |||| | |||| | Sbjct 21139 GATATATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATA-CTTATCATTACCAAA 21197 Query 16020 GTTCCGTAACTAATCTATCTGCTACAA-ATTCTATATATTGACACATTAAGTCGCAATTA 16078 ||| |||||||| || |||| |||| | |||||||||||| || || ||||| Sbjct 21198 AGCAACCAAC-AATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTC 21255 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || | | || ||||| || | | || | | | ||| || ||| ||| Sbjct 21256 ATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCT 21315 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAG---ACGGTGTATGGTTTAGGTGTTTAAAC 16195 || | ||||| | || | || ||| ||| | | || | ||| Sbjct 21316 TC---AGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAAT 21372 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || ||| || | ||| || | |||||||| || | ||| | ||| || || ||| Sbjct 21373 AGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAA 21432 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 ||||| |||||||| |||| ||| || ||||| || || | ||| |||||||| Sbjct 21433 GTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTG 21492 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| || || |||| || ||||| || | |||| ||| || || || |||| Sbjct 21493 AAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCG 21552 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 | |||||||| | |||| || ||||||| Sbjct 21553 TCTTGAATCCATCTAATAGCCCAATCTGCTTTTT 21586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412053886440