Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq250 325 4e-84 seq307 320 2e-82 seq124 215 5e-51 >seq250 Length=32566 Score = 325 bits (360), Expect = 4e-84 Identities = 607/885 (69%), Gaps = 15/885 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || ||| |||||||||||| || || || ||||| || | || |||||||| Sbjct 29483 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 29424 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAA 16059 |||||| ||||| || || || | |||| | ||| ||| | | ||||| | || Sbjct 29423 TTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTCTTGTTACCCAAGGCAAA 29367 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||||||||||| || ||| |||| | ||| || ||| || ||||||||||| || | Sbjct 29366 TAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAA 29307 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| ||| || | || || || ||| | | |||||| | || ||| ||||||| || Sbjct 29306 TAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAAT 29247 Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236 || | || | ||| | | | | || || | ||||| |||| | ||| Sbjct 29246 AATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGAGAACAACAAACA 29190 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||||| ||| || ||||| || |||| || || || || || || || | ||| Sbjct 29189 AGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACC 29130 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||| | |||| ||||| | ||| || |||| |||||||||||| ||||| || Sbjct 29129 TGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAAT 29070 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||||| |||||||||| ||| | || || |||| || || Sbjct 29069 ACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTATCTTGAAT 29010 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | ||||| | ||| ||| ||||| || || |||||||| Sbjct 29009 CCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAAA 28950 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 || ||| ||||| ||| || |||||| || |||| |||| ||||||||| Sbjct 28949 CAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTTC 28890 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 |||||||| || ||||| || || |||||||| || || ||||||| | | ||| Sbjct 28889 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTTG 28830 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| |||| |||| |||||||| ||| || ||||| ||| || || Sbjct 28829 GACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 28770 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAACCAGTC 16713 ||| || | | || ||||| |||||| || || | || | || ||| || Sbjct 28769 AAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGTTCCAATC 28710 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | |||||||| |||||| || ||||| |||||| || || || | || ||||| Sbjct 28709 ATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTTTT 28650 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 ||| | ||||| || || | || ||| ||||||| |||||| Sbjct 28649 ATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATA 28605 >seq307 Length=48190 Score = 320 bits (354), Expect = 2e-82 Identities = 606/885 (68%), Gaps = 15/885 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || ||| |||||||||||| || || || ||||| || | || |||||||| Sbjct 39997 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 39938 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAA 16059 |||||| ||||| || || || | |||| | ||| ||| | | ||||| | || Sbjct 39937 TTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTCTTGTTACCCAAGGCAAA 39881 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||||||||||| || ||| |||| | ||| || ||| || ||||||||||| || | Sbjct 39880 TAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAA 39821 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| ||| || | || || || ||| | | |||||| | || ||| ||||||| || Sbjct 39820 TAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAAT 39761 Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236 || | || | ||| | | | | || || | ||||| |||| | ||| Sbjct 39760 AATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGAGAACAACAAACA 39704 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||||| ||| || ||||| || |||| || || || || || || || | ||| Sbjct 39703 AGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACC 39644 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||| | |||| ||||| | ||| || |||| |||||||||||| ||||| || Sbjct 39643 TGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAAT 39584 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||||| |||||||||| ||| | || || |||| || || Sbjct 39583 ACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTATCTTGAAT 39524 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | ||||| | ||| ||| ||||| || || |||||||| Sbjct 39523 CCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAAA 39464 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 || ||| ||||| ||| || |||||| || |||| |||| ||||||||| Sbjct 39463 CAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTTC 39404 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 |||||||| || ||||| || || |||||||| || || ||||||| | | ||| Sbjct 39403 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTTG 39344 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||| | |||| |||| |||||||| ||| || ||||| ||| || || Sbjct 39343 GACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 39284 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAACCAGTC 16713 ||| || | | || ||||| |||||| || || | || | || ||| || Sbjct 39283 AAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGTTCCAATC 39224 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | |||||||| |||||| || ||||| |||||| || || || | || ||||| Sbjct 39223 ATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTTTT 39164 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 ||| | ||||| || || | || ||| ||||||| |||||| Sbjct 39163 ATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATA 39119 >seq124 Length=102737 Score = 215 bits (238), Expect = 5e-51 Identities = 558/835 (67%), Gaps = 23/835 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| || ||| |||||||||||||||||||| ||||| || | || || ||||||| Sbjct 21089 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 21148 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 |||| |||||||| ||||| | ||| || ||||| || || | | ||| | Sbjct 21149 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACA 21208 Query 16065 ATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 ||||||| || |||| |||| | ||| || ||| |||||||| ||||| || | || Sbjct 21209 ATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 21267 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||| || | || || | || | || ||||| ||| |||| |||||| |||| || Sbjct 21268 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 21327 Query 16184 TCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTAAACATTATACAA 16237 | || ||| | || || ||| || ||| | |||| | ||| | || |||| Sbjct 21328 T---TTTCTATA--ATGGAA-GGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 21381 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||| |||| || | ||||||||||||| || || || ||||| || || | |||| Sbjct 21382 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 21441 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| | |||| |||||| | |||||| || | || ||||| ||| ||||| || Sbjct 21442 GGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAATG 21501 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||||| || |||||||| ||||||| || | || | || || ||| Sbjct 21502 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAATC 21561 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 ||| | ||||||||| |||||||| || | || || || || || || || || Sbjct 21562 CATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAAC 21621 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 || ||| || || ||| | || || || |||| | ||| ||||| Sbjct 21622 AAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCT 21681 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC-TAGCTTCGGATATTTG 16596 ||||| ||||| ||||| ||||| || | ||| || | | ||||| | | || Sbjct 21682 GAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTT 21740 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| |||| |||| | |||||||| || ||||| ||||| || ||||| Sbjct 21741 AACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAA 21800 Query 16657 AAACGC---AAGT-ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT-TTTAACCAG 16711 ||| || || | || | | || ||| ||| || |||| | | | ||| ||| Sbjct 21801 AAAGGCTAAAACTCTTGAGATGAA-AAATCTTTCATCTTTAT-TCATTTTATTTTCCCAA 21858 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 ||| ||||||||| || || | |||||| | |||||||| || ||||||| Sbjct 21859 TCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAG 21913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509878226200