Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05-
08] 367 sequences; 13,991,476 total letters
Query= NC_003038.1
Length=212482
Score E
Sequences producing significant alignments: (Bits) Value
seq259 122 1e-22
seq132 122 1e-22
>seq259
Length=87679
Score = 122 bits (134), Expect = 1e-22
Identities = 410/620 (66%), Gaps = 35/620 (6%)
Strand=Plus/Plus
Query 104153 AAGGCGAAGATCGTGACGATAGAACAGGAATTGGAACTAAAAATGTATTTGG---AGAAC 104209
|||| ||| | ||| || ||||||||| ||||||||| | |||| | ||
Sbjct 62799 AAGGTGAACACCGTCCAGACCGAACAGGAACAGGAACTAAATCACTTTTTGCTCCACCAC 62858
Query 104210 AATTAAAATTTAATTTAAGAAC--AT-CTTTTCCGTTACTAACTACaaaaaaaGTTTTTT 104266
|||||| |||| ||||| || || | ||||| || ||||||| || ||||| ||||
Sbjct 62859 AATTAAGATTTGATTTATCAAATGATACATTTCCATTGTTAACTACCAAGAAAGTCTTTT 62918
Query 104267 GGAAAGGAGTTGTAGAAGAACTCTTATGGTTTATTAGCGGGAGTA-CAGATGTTTCTGTA 104325
||||| | | | ||| | |||||||||||| || ||| | | |||| | |
Sbjct 62919 CTAAAGGTATCATTCATGAATTATTATGGTTTATT-GCTGGATCAACCGATGCTAAAATT 62977
Query 104326 TTAAATCAAAAAGGAGTTAAAATTTGGAATAAAAATGCAGAATCGT---TTTATACACAA 104382
|||| | ||||| |||||||||||| | |||| | |||| ||| || | ||
Sbjct 62978 TTAACCAACAAAGGTGTTAAAATTTGGGAAGGTAATGGATC-TCGTGAGTTTTTAGATAA 63036
Query 104383 CAAAA-------TCTTTTTaaaaaaaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAG 104435
| || | | || |||||| ||||| |||||||||| || |||||
Sbjct 63037 GTTAGGATTGACTCATCGTCGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAG 63096
Query 104436 ACATTATGGTGAAAATTATATTGGGTGCGATAATAAATATGGTGG-------TATAGATC 104488
||| | ||||| | |||| | || ||| | | ||| ||| ||| ||||
Sbjct 63097 ACACTTTGGTGCTGAATATAAAGATTGTGATGCTGATTATACTGGACAAGGTTAT-GATC 63155
Query 104489 AACTCAAAAATATTATTACAACAATTCAAAATGAACCT-TGGGATAGAAGAATGAT-ATT 104546
| | || |||| |||| | |||| || | |||| | ||||||||||| || ||
Sbjct 63156 AGTTGCAAGATATCATTAAGA-AATTAAAGACCAACCCATATGATAGAAGAATAATCATG 63214
Query 104547 ATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCTCCTTGTCAT-TGTATAG 104605
| | || ||||| ||| ||| | ||||||||| | ||||| |||||| | | | |
Sbjct 63215 AGT-GCCTGGAATCCACCAGATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTTTG 63273
Query 104606 CACATTTTGATGT-AAGTTCAAAAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTT 104664
||| | |||| || ||| | | ||| | |||| |||| || ||| || | |
Sbjct 63274 TCAATTCT-ATGTTAATTTCCCAGA-AAACGCTAAACCTAAATTATCATGTTTATTGTAT 63331
Query 104665 CAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTA 104724
|| |||||| |||||||| |||||||||||||| ||||| || ||||| || |||
Sbjct 63332 CAGAGATCTTGTGATATGGGTTTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTTA 63391
Query 104725 ACACATATAATAGCTCATGT 104744
|| | || || ||||||||
Sbjct 63392 ACTAAGATGATTGCTCATGT 63411
>seq132
Length=62843
Score = 122 bits (134), Expect = 1e-22
Identities = 410/620 (66%), Gaps = 35/620 (6%)
Strand=Plus/Minus
Query 104153 AAGGCGAAGATCGTGACGATAGAACAGGAATTGGAACTAAAAATGTATTTGG---AGAAC 104209
|||| ||| | ||| || ||||||||| ||||||||| | |||| | ||
Sbjct 31030 AAGGTGAACACCGTCCAGACCGAACAGGAACAGGAACTAAATCACTTTTTGCTCCACCAC 30971
Query 104210 AATTAAAATTTAATTTAAGAAC--AT-CTTTTCCGTTACTAACTACaaaaaaaGTTTTTT 104266
|||||| |||| ||||| || || | ||||| || ||||||| || ||||| ||||
Sbjct 30970 AATTAAGATTTGATTTATCAAATGATACATTTCCATTGTTAACTACCAAGAAAGTCTTTT 30911
Query 104267 GGAAAGGAGTTGTAGAAGAACTCTTATGGTTTATTAGCGGGAGTA-CAGATGTTTCTGTA 104325
||||| | | | ||| | |||||||||||| || ||| | | |||| | |
Sbjct 30910 CTAAAGGTATCATTCATGAATTATTATGGTTTATT-GCTGGATCAACCGATGCTAAAATT 30852
Query 104326 TTAAATCAAAAAGGAGTTAAAATTTGGAATAAAAATGCAGAATCGT---TTTATACACAA 104382
|||| | ||||| |||||||||||| | |||| | |||| ||| || | ||
Sbjct 30851 TTAACCAACAAAGGTGTTAAAATTTGGGAAGGTAATGGATC-TCGTGAGTTTTTAGATAA 30793
Query 104383 CAAAA-------TCTTTTTaaaaaaaaTGATTTAGGACCTATTTATGGTTTTCAGTGGAG 104435
| || | | || |||||| ||||| |||||||||| || |||||
Sbjct 30792 GTTAGGATTGACTCATCGTCGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAG 30733
Query 104436 ACATTATGGTGAAAATTATATTGGGTGCGATAATAAATATGGTGG-------TATAGATC 104488
||| | ||||| | |||| | || ||| | | ||| ||| ||| ||||
Sbjct 30732 ACACTTTGGTGCTGAATATAAAGATTGTGATGCTGATTATACTGGACAAGGTTAT-GATC 30674
Query 104489 AACTCAAAAATATTATTACAACAATTCAAAATGAACCT-TGGGATAGAAGAATGAT-ATT 104546
| | || |||| |||| | |||| || | |||| | ||||||||||| || ||
Sbjct 30673 AGTTGCAAGATATCATTAAGA-AATTAAAGACCAACCCATATGATAGAAGAATAATCATG 30615
Query 104547 ATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCTCCTTGTCAT-TGTATAG 104605
| | || ||||| ||| ||| | ||||||||| | ||||| |||||| | | | |
Sbjct 30614 AGT-GCCTGGAATCCACCAGATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTTTG 30556
Query 104606 CACATTTTGATGT-AAGTTCAAAAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTT 104664
||| | |||| || ||| | | ||| | |||| |||| || ||| || | |
Sbjct 30555 TCAATTCT-ATGTTAATTTCCCAGA-AAACGCTAAACCTAAATTATCATGTTTATTGTAT 30498
Query 104665 CAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTA 104724
|| |||||| |||||||| |||||||||||||| ||||| || ||||| || |||
Sbjct 30497 CAGAGATCTTGTGATATGGGTTTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTTA 30438
Query 104725 ACACATATAATAGCTCATGT 104744
|| | || || ||||||||
Sbjct 30437 ACTAAGATGATTGCTCATGT 30418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 679811281351440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |