Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq307 170 4e-37 seq250 170 4e-37 seq124 132 1e-25 seq259 107 4e-18 seq132 107 4e-18 >seq307 Length=48190 Score = 170 bits (188), Expect = 4e-37 Identities = 306/443 (69%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| ||||||| || ||||| |||||| |||| || || || |||||| Sbjct 39560 GTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGCTTCTATCTTCTGG 39619 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| | |||| ||| | || | ||||||||| || || | ||| || Sbjct 39620 TTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATTGATCTGTAGAGAT 39679 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | ||| || ||||| || || |||| | || | | ||| Sbjct 39680 GAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCAC---TTGCAACACAGACCA 39736 Query 102098 TCAAGAGAAAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||||| || |||||| || | |||||| || ||||| |||||| | Sbjct 39737 TCTCCAGAAA---TTGTTGAAAAGATTATTGTTGAAGCTGTTGATGTTGAAAAAGAATAT 39793 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 |||| | | | || || ||| ||| |||| |||||||| | |||||| | || || Sbjct 39794 TTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACTGTGACTTGATGTGTCAATAT 39853 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272 |||||| ||| || |||| | |||| ||| |||| || ||||| || |||| Sbjct 39854 GTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGGTAACAAGAAAGTT--TACAATG 39911 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||| ||||| ||| |||||||| ||||||||| | | ||| ||||||||||| | Sbjct 39912 TTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGGCTGGTAAAACCAACTTTTTCG 39971 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||| | || || ||| Sbjct 39972 AAAAGAGAGTTTCTGATTACCAA 39994 >seq250 Length=32566 Score = 170 bits (188), Expect = 4e-37 Identities = 306/443 (69%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| ||||||| || ||||| |||||| |||| || || || |||||| Sbjct 29046 GTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGCTTCTATCTTCTGG 29105 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| | |||| ||| | || | ||||||||| || || | ||| || Sbjct 29106 TTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATTGATCTGTAGAGAT 29165 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | ||| || ||||| || || |||| | || | | ||| Sbjct 29166 GAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCAC---TTGCAACACAGACCA 29222 Query 102098 TCAAGAGAAAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||||| || |||||| || | |||||| || ||||| |||||| | Sbjct 29223 TCTCCAGAAA---TTGTTGAAAAGATTATTGTTGAAGCTGTTGATGTTGAAAAAGAATAT 29279 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 |||| | | | || || ||| ||| |||| |||||||| | |||||| | || || Sbjct 29280 TTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACTGTGACTTGATGTGTCAATAT 29339 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272 |||||| ||| || |||| | |||| ||| |||| || ||||| || |||| Sbjct 29340 GTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGGTAACAAGAAAGTT--TACAATG 29397 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||| ||||| ||| |||||||| ||||||||| | | ||| ||||||||||| | Sbjct 29398 TTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGGCTGGTAAAACCAACTTTTTCG 29457 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||| | || || ||| Sbjct 29458 AAAAGAGAGTTTCTGATTACCAA 29480 >seq124 Length=102737 Score = 132 bits (146), Expect = 1e-25 Identities = 350/525 (67%), Gaps = 21/525 (4%) Strand=Plus/Minus Query 101857 GAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACT 101913 ||| ||| || | |||||||||| ||||| ||| | | | | ||| || ||| Sbjct 21587 GAAAAAGCAG-ATTGGGCTATTAGATGGATTCAAGACGAAGAAGCCTTGTTTGCAGAAAG 21529 Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 | | || || |||||||| ||||||| || ||||| ||||| ||||||| |||||||| Sbjct 21528 ATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCATTCGCTTCCATTTT 21469 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 ||| | || || || || | |||| ||| | || | ||| ||||| || || | ||| Sbjct 21468 TTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATCTGTAG 21409 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA- 102092 |||||||||| |||| ||| | ||| || | || || | | || | ||| Sbjct 21408 GGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA---CTTGGAGAATAA 21352 Query 102093 -CCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 || ||| ||| | ||| ||| |||||||||| || | |||||| || Sbjct 21351 GCCGGATC-----CTTCCATTATAGAAAAGATTATCACTGAAGCTGTTAGTATTGAA-AA 21298 Query 102149 GAATTTC-TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 ||| | | ||| | | | || || ||| || |||| ||||| || | |||||| | Sbjct 21297 GAAGTACTTCAGTGATGCGCTTCCAGTTTCTTTGTTGGGTATGAATTGTGATTTGATGTG 21238 Query 102208 CCAGTACATTGAAT-TTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 || || | |||| |||| || |||| | | ||||||| | || || ||| | | Sbjct 21237 TCAATATGTGGAATATTGT-GCCGATAGATTGTTGGTTGCTTTTGGTAATGATAAGTATT 21179 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 |||| || || || || || |||||||| ||||| ||| | | ||| ||||| | Sbjct 21178 ATAACGTGACTAATCCATTTGATTTCATGGAAAATATATCCTTGGCCGGTAAAACCAATT 21119 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGG 102371 | |||||||||||||| | || || ||| | || ||||||| Sbjct 21118 TCTTTGAAAAGAGAGTGTCTGATTACCAAAGAGCTGGTGTCATGG 21074 >seq259 Length=87679 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | || ||||||||||||||| | Sbjct 63059 GAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAA 63118 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| | | |||||||||||| | ||| |||||| ||| |||| | |||| Sbjct 63119 GATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGA-A 63177 Query 35513 CTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | ||| || ||| |||||||||| || || |||| || |||||||| ||| | Sbjct 63178 ATTAAAGACCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTT 63237 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | | |||||| | |||||||| || | | |||||| ||||| Sbjct 63238 TGATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGT 63285 >seq132 Length=62843 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | || ||||||||||||||| | Sbjct 30770 GAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAA 30711 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| | | |||||||||||| | ||| |||||| ||| |||| | |||| Sbjct 30710 GATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGA-A 30652 Query 35513 CTGAGAGA-AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | ||| || ||| |||||||||| || || |||| || |||||||| ||| | Sbjct 30651 ATTAAAGACCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTT 30592 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | | |||||| | |||||||| || | | |||||| ||||| Sbjct 30591 TGATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGT 30544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579346790485