Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05-
08] 367 sequences; 13,991,476 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq307 320 2e-82
seq250 320 2e-82
seq124 251 7e-62
>seq307
Length=48190
Score = 320 bits (354), Expect = 2e-82
Identities = 614/894 (69%), Gaps = 17/894 (2%)
Strand=Plus/Minus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
||||| ||||| || |||||| || ||| |||||| ||||| || ||||| ||||||
Sbjct 40014 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 39955
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681
|| ||| || ||||||||||| ||||| ||||| || | | |||| | ||||| |
Sbjct 39954 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTT-AGTAACATTGTAAACTTTCTT 39896
Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741
||| | | |||| |||||||||||||| | | |||| ||||||| |||| || ||
Sbjct 39895 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 39836
Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801
||| |||||||| | || || |||| || || ||| |||||||||| | |
Sbjct 39835 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 39776
Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861
||||| || ||||| || || ||| || ||| || | || | ||
Sbjct 39775 AACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGA 39716
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
|| | ||||| ||||||||| ||| | || |||||||||| || | ||| || ||
Sbjct 39715 GAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGA 39656
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|| || || ||||||||||| |||| ||||| ||||| || || | ||||||||| ||
Sbjct 39655 GAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACC 39596
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
||||| || || |||| |||||||| || | |||| ||| || | | || |
Sbjct 39595 ACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATC 39536
Query 14042 TTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100
||| | | || |||||||| | |||||||||| ||| || ||||| | || |||
Sbjct 39535 TTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTT 39477
Query 14101 CAATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158
|||| |||||||| || | || ||||| | | | ||| || || || ||||| |
Sbjct 39476 CAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAATTAA 39419
Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218
||| |||||||||||| || ||||||||||| || || |||||||| || || |
Sbjct 39418 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 39359
Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278
|||||| | | ||| ||||| | |||| |||| ||| |||||| ||| |||||
Sbjct 39358 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 39299
Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TT 14335
|||| ||| || ||||| || || | | || ||| ||| | ||||||| ||
Sbjct 39298 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTCATT 39242
Query 14336 GAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| | || |||||||| ||||| ||| | ||| ||||| ||| ||||| ||
Sbjct 39241 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 39182
Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446
|| | ||||||||||| | ||| ||||| | |||| || |||||
Sbjct 39181 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 39128
>seq250
Length=32566
Score = 320 bits (354), Expect = 2e-82
Identities = 614/894 (69%), Gaps = 17/894 (2%)
Strand=Plus/Minus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
||||| ||||| || |||||| || ||| |||||| ||||| || ||||| ||||||
Sbjct 29500 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 29441
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681
|| ||| || ||||||||||| ||||| ||||| || | | |||| | ||||| |
Sbjct 29440 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTT-AGTAACATTGTAAACTTTCTT 29382
Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741
||| | | |||| |||||||||||||| | | |||| ||||||| |||| || ||
Sbjct 29381 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 29322
Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801
||| |||||||| | || || |||| || || ||| |||||||||| | |
Sbjct 29321 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 29262
Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861
||||| || ||||| || || ||| || ||| || | || | ||
Sbjct 29261 AACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGA 29202
Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921
|| | ||||| ||||||||| ||| | || |||||||||| || | ||| || ||
Sbjct 29201 GAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGA 29142
Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981
|| || || ||||||||||| |||| ||||| ||||| || || | ||||||||| ||
Sbjct 29141 GAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACC 29082
Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041
||||| || || |||| |||||||| || | |||| ||| || | | || |
Sbjct 29081 ACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATC 29022
Query 14042 TTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100
||| | | || |||||||| | |||||||||| ||| || ||||| | || |||
Sbjct 29021 TTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTT 28963
Query 14101 CAATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158
|||| |||||||| || | || ||||| | | | ||| || || || ||||| |
Sbjct 28962 CAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAATTAA 28905
Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218
||| |||||||||||| || ||||||||||| || || |||||||| || || |
Sbjct 28904 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 28845
Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278
|||||| | | ||| ||||| | |||| |||| ||| |||||| ||| |||||
Sbjct 28844 AGCTTCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 28785
Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TT 14335
|||| ||| || ||||| || || | | || ||| ||| | ||||||| ||
Sbjct 28784 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTCATT 28728
Query 14336 GAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| | || |||||||| ||||| ||| | ||| ||||| ||| ||||| ||
Sbjct 28727 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 28668
Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446
|| | ||||||||||| | ||| ||||| | |||| || |||||
Sbjct 28667 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 28614
>seq124
Length=102737
Score = 251 bits (278), Expect = 7e-62
Identities = 594/883 (67%), Gaps = 27/883 (3%)
Strand=Plus/Plus
Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641
|||| || ||| ||||| ||||||||||| || |||||||| ||| ||||||||||
Sbjct 21089 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 21148
Query 13642 CCATAAAATCAAATGGATTTATTGACATAA--ACACTTTATCACAACCTAGTTCTAATAG 13699
|||| |||||||||||||| | | || | | | |||| |||| ||| | | | |
Sbjct 21149 CCATGAAATCAAATGGATT-AGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAA 21206
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
|||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | |
Sbjct 21207 CAATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 21266
Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819
|| |||| || | || | | ||||| ||| ||||| || | |||||
Sbjct 21267 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAAT 21326
Query 13820 AATTGTAATAATCTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACA 13873
|| ||||| |||||| | |||| | | || | ||||| ||||||
Sbjct 21327 CTTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACA 21380
Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933
||| |||| |||| || || || |||| || | ||| ||||| || ||||| ||
Sbjct 21381 AGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACC 21440
Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993
||||||||| |||| |||||| |||||||| || | ||| |||||||| ||||| ||
Sbjct 21441 TGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAAT 21500
Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATA 14052
|| |||| |||||||| || | |||| |||| ||||| | |||| || || | || |
Sbjct 21501 GCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-A 21559
Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112
||||| | ||||||| || | ||||| ||| | | || | ||||| || || |
Sbjct 21560 TCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGA 21619
Query 14113 ATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170
| || | || ||| |||| | |||||| ||| || ||||| | | | ||| |
Sbjct 21620 ACAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGT 21677
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC-TAGCTTCCGACC 14229
||| || || || |||||||| ||||| || | ||| || | | ||||| |
Sbjct 21678 TTCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAA 21736
Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289
|| ||||| | |||| |||| |||| |||||||| ||||||||||| || |
Sbjct 21737 GTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAG 21796
Query 14290 CAAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCC 14346
||||||| || || | || || ||| | || | |||| ||| | |||| ||
Sbjct 21797 CAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCC 21856
Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406
|||| ||||| ||| | || | ||| || |||||||||| || |||| ||
Sbjct 21857 AATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATT 21916
Query 14407 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449
| || || | ||| ||||| |||| ||| ||||| ||
Sbjct 21917 TCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 21959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479725799247800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |