Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq307 320 2e-82 seq250 320 2e-82 seq124 251 7e-62 >seq307 Length=48190 Score = 320 bits (354), Expect = 2e-82 Identities = 614/894 (69%), Gaps = 17/894 (2%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 ||||| ||||| || |||||| || ||| |||||| ||||| || ||||| |||||| Sbjct 40014 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 39955 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || ||| || ||||||||||| ||||| ||||| || | | |||| | ||||| | Sbjct 39954 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTT-AGTAACATTGTAAACTTTCTT 39896 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 ||| | | |||| |||||||||||||| | | |||| ||||||| |||| || || Sbjct 39895 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 39836 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||| | || || |||| || || ||| |||||||||| | | Sbjct 39835 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 39776 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 ||||| || ||||| || || ||| || ||| || | || | || Sbjct 39775 AACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGA 39716 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || || Sbjct 39715 GAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGA 39656 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || || || ||||||||||| |||| ||||| ||||| || || | ||||||||| || Sbjct 39655 GAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACC 39596 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| || || |||| |||||||| || | |||| ||| || | | || | Sbjct 39595 ACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATC 39536 Query 14042 TTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 ||| | | || |||||||| | |||||||||| ||| || ||||| | || ||| Sbjct 39535 TTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTT 39477 Query 14101 CAATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 |||| |||||||| || | || ||||| | | | ||| || || || ||||| | Sbjct 39476 CAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAATTAA 39419 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 ||| |||||||||||| || ||||||||||| || || |||||||| || || | Sbjct 39418 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 39359 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 |||||| | | ||| ||||| | |||| |||| ||| |||||| ||| ||||| Sbjct 39358 AGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 39299 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TT 14335 |||| ||| || ||||| || || | | || ||| ||| | ||||||| || Sbjct 39298 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTCATT 39242 Query 14336 GAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | | || |||||||| ||||| ||| | ||| ||||| ||| ||||| || Sbjct 39241 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 39182 Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 39181 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 39128 >seq250 Length=32566 Score = 320 bits (354), Expect = 2e-82 Identities = 614/894 (69%), Gaps = 17/894 (2%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 ||||| ||||| || |||||| || ||| |||||| ||||| || ||||| |||||| Sbjct 29500 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 29441 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATC 13681 || ||| || ||||||||||| ||||| ||||| || | | |||| | ||||| | Sbjct 29440 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTT-AGTAACATTGTAAACTTTCTT 29382 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 ||| | | |||| |||||||||||||| | | |||| ||||||| |||| || || Sbjct 29381 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 29322 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 ||| |||||||| | || || |||| || || ||| |||||||||| | | Sbjct 29321 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 29262 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 ||||| || ||||| || || ||| || ||| || | || | || Sbjct 29261 AACAGCTTCAACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGA 29202 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || || Sbjct 29201 GAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGA 29142 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || || || ||||||||||| |||| ||||| ||||| || || | ||||||||| || Sbjct 29141 GAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACC 29082 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||||| || || |||| |||||||| || | |||| ||| || | | || | Sbjct 29081 ACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATC 29022 Query 14042 TTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 ||| | | || |||||||| | |||||||||| ||| || ||||| | || ||| Sbjct 29021 TTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTT 28963 Query 14101 CAATAGCATTAAATAAATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 |||| |||||||| || | || ||||| | | | ||| || || || ||||| | Sbjct 28962 CAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAATTAA 28905 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 ||| |||||||||||| || ||||||||||| || || |||||||| || || | Sbjct 28904 TAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTT 28845 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 |||||| | | ||| ||||| | |||| |||| ||| |||||| ||| ||||| Sbjct 28844 AGCTTCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACC 28785 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TT 14335 |||| ||| || ||||| || || | | || ||| ||| | ||||||| || Sbjct 28784 ATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTCATT 28728 Query 14336 GAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | | || |||||||| ||||| ||| | ||| ||||| ||| ||||| || Sbjct 28727 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 28668 Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 28667 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 28614 >seq124 Length=102737 Score = 251 bits (278), Expect = 7e-62 Identities = 594/883 (67%), Gaps = 27/883 (3%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||| || ||| ||||| ||||||||||| || |||||||| ||| |||||||||| Sbjct 21089 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 21148 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA--ACACTTTATCACAACCTAGTTCTAATAG 13699 |||| |||||||||||||| | | || | | | |||| |||| ||| | | | | Sbjct 21149 CCATGAAATCAAATGGATT-AGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAA 21206 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | | Sbjct 21207 CAATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 21266 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || |||| || | || | | ||||| ||| ||||| || | ||||| Sbjct 21267 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAAT 21326 Query 13820 AATTGTAATAATCTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACA 13873 || ||||| |||||| | |||| | | || | ||||| |||||| Sbjct 21327 CTTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACA 21380 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||| |||| |||| || || || |||| || | ||| ||||| || ||||| || Sbjct 21381 AGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACC 21440 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||||||| |||| |||||| |||||||| || | ||| |||||||| ||||| || Sbjct 21441 TGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAAT 21500 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATA 14052 || |||| |||||||| || | |||| |||| ||||| | |||| || || | || | Sbjct 21501 GCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-A 21559 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||| | ||||||| || | ||||| ||| | | || | ||||| || || | Sbjct 21560 TCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGA 21619 Query 14113 ATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 | || | || ||| |||| | |||||| ||| || ||||| | | | ||| | Sbjct 21620 ACAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGT 21677 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC-TAGCTTCCGACC 14229 ||| || || || |||||||| ||||| || | ||| || | | ||||| | Sbjct 21678 TTCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAA 21736 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| | |||| |||| |||| |||||||| ||||||||||| || | Sbjct 21737 GTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAG 21796 Query 14290 CAAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCC 14346 ||||||| || || | || || ||| | || | |||| ||| | |||| || Sbjct 21797 CAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCC 21856 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 |||| ||||| ||| | || | ||| || |||||||||| || |||| || Sbjct 21857 AATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATT 21916 Query 14407 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 | || || | ||| ||||| |||| ||| ||||| || Sbjct 21917 TCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 21959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725799247800