Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq307 331 9e-86 seq250 331 9e-86 seq124 248 8e-61 >seq307 Length=48190 Score = 331 bits (366), Expect = 9e-86 Identities = 619/897 (69%), Gaps = 23/897 (3%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 ||||| ||||| || |||||| || ||| |||||| ||||| |||||||| |||||| Sbjct 40014 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 39955 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || ||| || ||||||||||| ||||||||||| || || |||| | ||||| | Sbjct 39954 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 39896 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 ||| | | ||||||||||||||||||| | | |||| ||||||| |||| || || Sbjct 39895 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 39836 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 ||| |||||||| | || || |||| || ||| ||| |||||||||| | | Sbjct 39835 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 39776 Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 ||||| || | ||||||||| || ||| || ||| || | || | || Sbjct 39775 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 39719 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || Sbjct 39718 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 39659 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 || || || || ||||||||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 39658 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 39599 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || ||||| || || |||| |||||||| || | | || ||| || | | || Sbjct 39598 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 39539 Query 13827 TTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 | ||| | |||| |||||||| | |||||||||| ||| || ||||| | || Sbjct 39538 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 39480 Query 13886 TTTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||| || ||||| || || || ||||| | | | ||| || || || ||||| Sbjct 39479 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 39422 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | ||| |||||||||||| || |||||||| || || || |||||||| || | Sbjct 39421 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 39362 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||||| | ||| || || | |||| |||| |||||||||| |||||| Sbjct 39361 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 39302 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14121 ||||||| ||| || ||||| || || | | || ||| ||| | ||||||| Sbjct 39301 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTC 39245 Query 14122 -TTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || | | || |||||||| | ||||| ||| | ||| ||||| ||| ||||| Sbjct 39244 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 39185 Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 || || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 39184 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 39128 >seq250 Length=32566 Score = 331 bits (366), Expect = 9e-86 Identities = 619/897 (69%), Gaps = 23/897 (3%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 ||||| ||||| || |||||| || ||| |||||| ||||| |||||||| |||||| Sbjct 29500 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 29441 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATC 13469 || ||| || ||||||||||| ||||||||||| || || |||| | ||||| | Sbjct 29440 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 29382 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 ||| | | ||||||||||||||||||| | | |||| ||||||| |||| || || Sbjct 29381 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 29322 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 ||| |||||||| | || || |||| || ||| ||| |||||||||| | | Sbjct 29321 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 29262 Query 13590 CACAGCCTCGTTTATAATAATCTT---AATAATGTCATTAGAAGGAGGATATTTTAGATG 13646 ||||| || | ||||||||| || ||| || ||| || | || | || Sbjct 29261 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 29205 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || Sbjct 29204 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 29145 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 || || || || ||||||||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 29144 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 29085 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 || ||||| || || |||| |||||||| || | | || ||| || | | || Sbjct 29084 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 29025 Query 13827 TTTTTTGT-TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 | ||| | |||| |||||||| | |||||||||| ||| || ||||| | || Sbjct 29024 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 28966 Query 13886 TTTCGATTGCATTGAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||| || ||||| || || || ||||| | | | ||| || || || ||||| Sbjct 28965 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 28908 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | ||| |||||||||||| || |||||||| || || || |||||||| || | Sbjct 28907 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 28848 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||||| | ||| || || | |||| |||| |||||||||| |||||| Sbjct 28847 TTTAGCTTCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 28788 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14121 ||||||| ||| || ||||| || || | | || ||| ||| | ||||||| Sbjct 28787 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT---TTTTCATTGTC 28731 Query 14122 -TTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || | | || |||||||| | ||||| ||| | ||| ||||| ||| ||||| Sbjct 28730 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 28671 Query 14178 AAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 || || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 28670 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 28614 >seq124 Length=102737 Score = 248 bits (274), Expect = 8e-61 Identities = 592/882 (67%), Gaps = 25/882 (3%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||| || ||| ||||| |||||||| || || |||||||| ||| |||||||||| Sbjct 21089 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 21148 Query 13430 CCATAAAATCGAATGGATTTGTTGACATA-AACACTTTATCACAACCTAGTTCTAATAAT 13488 |||| ||||| |||||||| || || || |||| |||| ||| | | | || Sbjct 21149 CCATGAAATCAAATGGATTAGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAAC 21207 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 |||||||| ||| | | || | ||||||| |||| ||||||||||||||||| | | Sbjct 21208 AATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 21267 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 || |||| || | | || | | ||||| ||| ||||| || | ||||| Sbjct 21268 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 21327 Query 13609 ATCTTAATAATGTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACAC 13662 | | |||||| |||||| | |||| | | || | ||||| |||||| Sbjct 21328 TTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 21381 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||| |||| |||| || || || |||| || | ||| ||||| || ||||| ||| Sbjct 21382 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 21441 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 |||||||| |||| |||||| |||||||| || | ||||||||| || ||||| || Sbjct 21442 GGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAATG 21501 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATAT 13841 || |||| |||||||| || | | || |||| ||||| | |||| || || |||| || Sbjct 21502 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-AT 21560 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||| | ||||||| || | ||||| ||| | | || | || || || ||||| Sbjct 21561 CCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAA 21620 Query 13902 TAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || || ||| |||| | |||||| ||| || ||||| | | | ||| || Sbjct 21621 CAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGTT 21678 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC-TAGCTTCTGACCA 14018 || || || || ||||| || ||||| || | ||| || | | ||||| | Sbjct 21679 TCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAG 21737 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || | |||| |||| ||||||||||||| || |||||||| || || Sbjct 21738 TTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGC 21797 Query 14079 AAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGTTGAGTTTTTTCCA 14135 |||||| || || | || || ||| | || | |||| ||| | |||| ||| Sbjct 21798 AAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCA 21857 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 ||| | ||||| ||| | || | ||| || |||||||||| || |||| ||| Sbjct 21858 ATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTT 21917 Query 14196 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14237 || || | ||| ||||| |||| ||| ||||| || Sbjct 21918 CTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 21959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586604473880