Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq106 104 2e-17 seq297 98.7 1e-15 seq307 86.0 6e-12 seq250 86.0 6e-12 >seq106 Length=24021 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | |||||||| ||||| |||||||| || | Sbjct 4145 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGAC 4204 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| ||||| || || Sbjct 4205 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGA 4264 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | || | ||||| | || ||| ||| Sbjct 4265 ATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGACT 4324 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || || || ||||| |||||||| Sbjct 4325 TCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 4371 >seq297 Length=71103 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | |||||||||||||| |||||||| || | Sbjct 34795 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGAC 34736 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||||||||| | |||| | ||| ||||| || || Sbjct 34735 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 34676 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | || | ||||| | | ||| ||| Sbjct 34675 ATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCAACT 34616 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || || || ||||| |||||||| Sbjct 34615 TCCAAAGTGATAGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 34569 >seq307 Length=48190 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 ||||| || || | |||||||| | |||||| || ||| | || || | || ||||| Sbjct 39767 GAAGCTGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGT 39826 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||| ||| ||||||| | || |||| | |||||| || ||||| || || Sbjct 39827 ATGAACTGTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCC 39886 Query 50752 CTGGG--ACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50809 |||| |||| |||| || |||| |||||| || || ||| | || || | Sbjct 39887 TTGGGTAACAA--GAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTT 39944 Query 50810 CGTTGGAGGGCAAAACAAACTTTTTCGAAA 50839 | |||| || ||||| ||||||||||||| Sbjct 39945 CCTTGGCTGGTAAAACCAACTTTTTCGAAA 39974 >seq250 Length=32566 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 ||||| || || | |||||||| | |||||| || ||| | || || | || ||||| Sbjct 29253 GAAGCTGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGT 29312 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||| ||| ||||||| | || |||| | |||||| || ||||| || || Sbjct 29313 ATGAACTGTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCC 29372 Query 50752 CTGGG--ACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50809 |||| |||| |||| || |||| |||||| || || ||| | || || | Sbjct 29373 TTGGGTAACAA--GAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTT 29430 Query 50810 CGTTGGAGGGCAAAACAAACTTTTTCGAAA 50839 | |||| || ||||| ||||||||||||| Sbjct 29431 CCTTGGCTGGTAAAACCAACTTTTTCGAAA 29460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012074071440