Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq307 282 4e-71 seq250 279 4e-70 seq124 141 8e-29 >seq307 Length=48190 Score = 282 bits (312), Expect = 4e-71 Identities = 611/903 (68%), Gaps = 17/903 (2%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| |||||| || || |||||| ||||| |||||||| ||||| Sbjct 40014 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 39955 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTT 12958 || | || |||||||||||||| |||||||| || || | |||| | ||| ||| Sbjct 39954 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTC 39898 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || || || | | ||| ||||| ||||||||| | || | || || ||| || Sbjct 39897 TTGTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAG 39838 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 ||||||||||| || | ||| || || | ||| || || ||| | | |||||| | | Sbjct 39837 TCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACA 39778 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGAT-TTGATAGAT 13136 ||||| ||||| | || || | | | | | |||| | |||| | ||| || | Sbjct 39777 TCAACAGCTTCAACAATAATCTTT-TCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-T 39720 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | |||| || ||| ||||||||| || || ||||||||||||| || | || | Sbjct 39719 GGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCAT 39660 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | || || || | ||| ||||| | |||| ||||| | ||| || |||| |||||| | Sbjct 39659 TGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 39600 Query 13257 AACCC--GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 |||| ||| |||||| ||||||| || ||||| || | ||| |||||| |||| Sbjct 39599 AACCACTGAAGAAAATA--CCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 39542 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | || |||| | ||||| || ||||||| | ||||| | ||| || || Sbjct 39541 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 39482 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 ||||| || || ||||| || ||| ||| | |||| || |||||| || || Sbjct 39481 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 39422 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||||| ||||||||| |||||||| ||||||||| |||||||||||||| || | Sbjct 39421 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 39362 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||| |||| | || ||||||| |||| |||| |||||||| ||| || Sbjct 39361 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 39302 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--- 13611 || ||| |||||| ||||| || | | || ||| | |||||| || || Sbjct 39301 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATT 39242 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | || |||||| |||||||| |||||| || || ||| ||||| || Sbjct 39241 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 39182 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || || | || || ||||| | |||| || || | ||| ||| ||||||| ||| Sbjct 39181 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAAC 39122 Query 13732 GTA 13734 || Sbjct 39121 ATA 39119 >seq250 Length=32566 Score = 279 bits (308), Expect = 4e-70 Identities = 610/903 (68%), Gaps = 17/903 (2%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| |||||| || || |||||| ||||| |||||||| ||||| Sbjct 29500 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 29441 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTT 12958 || | || |||||||||||||| |||||||| || || | |||| | ||| ||| Sbjct 29440 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTC 29384 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || || || | | ||| ||||| ||||||||| | || | || || ||| || Sbjct 29383 TTGTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAG 29324 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 ||||||||||| || | ||| || || | ||| || || ||| | | |||||| | | Sbjct 29323 TCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACA 29264 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGAT-TTGATAGAT 13136 ||||| ||||| | || || | | | | | |||| | |||| | ||| || | Sbjct 29263 TCAACAGCTTCAACAATAATCTTT-TCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-T 29206 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | |||| || ||| ||||||||| || || ||||||||||||| || | || | Sbjct 29205 GGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCAT 29146 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | || || || | ||| ||||| | |||| ||||| | ||| || |||| |||||| | Sbjct 29145 TGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATG 29086 Query 13257 AACCC--GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 |||| ||| |||||| ||||||| || ||||| || | ||| |||||| |||| Sbjct 29085 AACCACTGAAGAAAATA--CCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 29028 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | || |||| | ||||| || ||||||| | ||||| | ||| || || Sbjct 29027 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 28968 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 ||||| || || ||||| || ||| ||| | |||| || |||||| || || Sbjct 28967 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 28908 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||||| ||||||||| |||||||| ||||||||| |||||||||||||| || | Sbjct 28907 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 28848 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||| |||| | || ||||| | |||| |||| |||||||| ||| || Sbjct 28847 TTTAGCTTCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 28788 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--- 13611 || ||| |||||| ||||| || | | || ||| | |||||| || || Sbjct 28787 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATT 28728 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | || |||||| |||||||| |||||| || || ||| ||||| || Sbjct 28727 TAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAA 28668 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || || | || || ||||| | |||| || || | ||| ||| ||||||| ||| Sbjct 28667 GGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAAC 28608 Query 13732 GTA 13734 || Sbjct 28607 ATA 28605 >seq124 Length=102737 Score = 141 bits (156), Expect = 8e-29 Identities = 563/875 (64%), Gaps = 37/875 (4%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| |||||||| || || ||||| || | || || ||||||||||| ||||| || Sbjct 21103 ACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAAT 21162 Query 12935 GGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACA 12994 ||||| || ||| || || | | || || | | |||||||| || ||| | Sbjct 21163 GGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACAATCTATCGGCACAA 21222 Query 12995 AACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCT 13054 | || | || || ||| |||||||| ||||| || | || || || | || Sbjct 21223 TATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCA 21282 Query 13055 TCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATAACTATGTCTCTTATTACG 13111 || | || | || ||||| ||| ||| ||||| ||||| |||| Sbjct 21283 TCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAA-------TCTT------ 21329 Query 13112 TTCTCTAATGGA-GGATTTGATAGATGCTT---------AAACATCATACATGCAAAATC 13161 |||| ||||||| |||| | || || ||| | | ||| ||| |||| Sbjct 21330 TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAAGCATAATC 21389 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 ||| | ||||| || |||| || | || ||||| || |||| ||| ||||| | Sbjct 21390 GGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCTGGCATCAA 21449 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 ||||| |||||| | |||||| || | ||| || || || || || || ||||||| Sbjct 21450 CCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAATGCCTTCAAT 21509 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACTTTC 13340 || ||||| || | ||| ||||| || || | || || ||| | |||| | Sbjct 21510 AGCAGCAAATGCCACCAATCTTTCTGCAAACA-AGGCTTCTTCGTCTTGAATCCATCTAA 21568 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 | ||||| | |||||||| || | | || ||||| || || ||||| || || ||| Sbjct 21569 TAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAACAAGAAAT 21628 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||||| || | || || || || || | | ||| |||||||||| | Sbjct 21629 CGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCTGAATGGA 21688 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATC-TAGCCTCTGATACCTGAACTTCG 13519 ||||||||||| || ||||| | ||| || | | || || | | | |||||| Sbjct 21689 TATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCA 21747 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC- 13578 | |||| |||| | |||||||| || ||||| || || ||||||||||| || Sbjct 21748 GTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAAAAAGGCT 21807 Query 13579 --AAGT-ATGTGCTTAATAAAttttttttCGTT-TTCTGACAACTTTAACCAATCTGGAA 13634 || | || | | || |||| ||| || || ||| | ||| |||||| || Sbjct 21808 AAAACTCTTGAGATGAA-AAATCTTTCATCTTTATTCATTTTA-TTTTCCCAATCATCAA 21865 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694 ||||||| || || | || || | |||||||| || ||||||| ||||| || | Sbjct 21866 AATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTCTTGTAGA 21925 Query 13695 TCATCCATATATCCTTATAAACAATGGGAAACACA 13729 |||| || || ||| || ||||||||| Sbjct 21926 AAGTCCAAATTTCAGGATATTTTATTGGAAACACA 21960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980472296534