Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq307 192 1e-43 seq250 192 1e-43 seq124 159 8e-34 seq297 149 1e-30 seq216 104 5e-17 >seq307 Length=48190 Score = 192 bits (212), Expect = 1e-43 Identities = 622/953 (65%), Gaps = 32/953 (3%) Strand=Plus/Plus Query 268705 TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTC 268764 ||| || |||||||| | || ||| || |||| | || ||| | |||| || || Sbjct 39121 TGTTATGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTC 39180 Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA----AAATT 268820 || |||||| |||||||| ||| | | | || || |||||||| ||||| Sbjct 39181 CTTCTGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATT 39240 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 || || | |||| | ||| | ||| || | || ||||| || | | ||||| Sbjct 39241 AAATGACA-ATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATG 39299 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 |||| ||| ||||| | | || || || | | || || || | || ||||| | Sbjct 39300 GTATTGTTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTA 39359 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 || || || || ||||| || || ||||| |||||||| || ||||| | ||| Sbjct 39360 AATCATTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTAT 39419 Query 269001 TAATAGATACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAG 269058 |||| || |||||| | | || |||| ||| | | ||| | | || || Sbjct 39420 TAATTGAAACTTATGTTAAAGACCCACAA-GAAGCTGATTTCTTGTTTAATGCCATTGAA 39478 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118 ||| | | ||| | | || ||| |||||||||| | |||||||| | |||| | Sbjct 39479 AACATTCCA-TGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 39537 Query 269119 GCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 ||| | | ||||| || ||||||||||| ||| | |||||||| ||||| || Sbjct 39538 TGCTTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGG 39597 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 || ||||| ||||||| |||||||| || ||||| | |||||||| || |||||||| Sbjct 39598 TTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 39657 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || |||||||| | || || ||||||||||| || || |||||||| || || | Sbjct 39658 CAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTC 39717 Query 269296 TAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTG 269354 | ||| | ||||| ||| |||| ||| | || | | ||||| | | ||||| Sbjct 39718 CCA----CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 39773 Query 269355 TTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATA 269414 || ||| |||| ||||| | | || || ||||| | | | | | |||||||| Sbjct 39774 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 39833 Query 269415 GCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGT 269474 | | | |||| ||||| || | | || |||||||||| | | | || || Sbjct 39834 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGG-- 39891 Query 269475 TTAGTAAAAAA---TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531 || || ||| || || ||| || || || ||| ||||| ||||| || || | Sbjct 39892 -TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGG 39950 Query 269532 AAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGT 269591 ||||| | || || ||||| ||| | || | | || || ||| ||||| |||| Sbjct 39951 CTGGTAAAACCAACTTTTTCGAAAAGAGAGTTTCTGATTACCAAAAAGCTGGTGTTATGT 40010 Query 269592 CTA---CTAAAGA---AGAAA---ATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| || |||| ||||| | ||||||| |||| ||| |||||| Sbjct 40011 CTAAAGCTGAAGACAGAGAAACCGGTGCTTTCACTTTTGATGAAGATTTCTAA 40063 >seq250 Length=32566 Score = 192 bits (212), Expect = 1e-43 Identities = 622/953 (65%), Gaps = 32/953 (3%) Strand=Plus/Plus Query 268705 TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTC 268764 ||| || |||||||| | || ||| || |||| | || ||| | |||| || || Sbjct 28607 TGTTATGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTC 28666 Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA----AAATT 268820 || |||||| |||||||| ||| | | | || || |||||||| ||||| Sbjct 28667 CTTCTGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATT 28726 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 || || | |||| | ||| | ||| || | || ||||| || | | ||||| Sbjct 28727 AAATGACA-ATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATG 28785 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 |||| ||| ||||| | | || || || | | || || || | || ||||| | Sbjct 28786 GTATTGTTGGTGAAAACTTGATTGAAAACTTTTCTGCTGAAGTCCAACTGCCAGAAGCTA 28845 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 || || || || ||||| || || ||||| |||||||| || ||||| | ||| Sbjct 28846 AATCATTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTAT 28905 Query 269001 TAATAGATACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAG 269058 |||| || |||||| | | || |||| ||| | | ||| | | || || Sbjct 28906 TAATTGAAACTTATGTTAAAGACCCACAA-GAAGCTGATTTCTTGTTTAATGCCATTGAA 28964 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118 ||| | | ||| | | || ||| |||||||||| | |||||||| | |||| | Sbjct 28965 AACATTCCA-TGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 29023 Query 269119 GCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 ||| | | ||||| || ||||||||||| ||| | |||||||| ||||| || Sbjct 29024 TGCTTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGG 29083 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 || ||||| ||||||| |||||||| || ||||| | |||||||| || |||||||| Sbjct 29084 TTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 29143 Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || |||||||| | || || ||||||||||| || || |||||||| || || | Sbjct 29144 CAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTC 29203 Query 269296 TAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTG 269354 | ||| | ||||| ||| |||| ||| | || | | ||||| | | ||||| Sbjct 29204 CCA----CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 29259 Query 269355 TTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATA 269414 || ||| |||| ||||| | | || || ||||| | | | | | |||||||| Sbjct 29260 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 29319 Query 269415 GCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGT 269474 | | | |||| ||||| || | | || |||||||||| | | | || || Sbjct 29320 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGG-- 29377 Query 269475 TTAGTAAAAAA---TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531 || || ||| || || ||| || || || ||| ||||| ||||| || || | Sbjct 29378 -TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGG 29436 Query 269532 AAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGT 269591 ||||| | || || ||||| ||| | || | | || || ||| ||||| |||| Sbjct 29437 CTGGTAAAACCAACTTTTTCGAAAAGAGAGTTTCTGATTACCAAAAAGCTGGTGTTATGT 29496 Query 269592 CTA---CTAAAGA---AGAAA---ATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| || |||| ||||| | ||||||| |||| ||| |||||| Sbjct 29497 CTAAAGCTGAAGACAGAGAAACCGGTGCTTTCACTTTTGATGAAGATTTCTAA 29549 >seq124 Length=102737 Score = 159 bits (176), Expect = 8e-34 Identities = 405/603 (67%), Gaps = 36/603 (6%) Strand=Plus/Minus Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771 ||||||||| | || ||| || |||| | ||||| | | ||||| || |||||| Sbjct 21956 TTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTTTGG 21897 Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA 268831 || | ||||||| | || || | | || || |||||| ||||| |||| ||| Sbjct 21896 ACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAAT--AAAAT--GAA 21841 Query 268832 GAAAGA----AGATTTAT-ATCTTATA--TTCTTGCGTTTTTTGCAGTTAGTGATGGTAT 268884 ||||| |||||| | |||| | || | || |||||||| | |||||||| Sbjct 21840 TAAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTAT 21781 Query 268885 CGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA-GAT 268943 || || ||||| | || || || || ||| || || | |||||||||||| | | Sbjct 21780 AGTCAATGAAAACTTGGTTGAAAACTTTTGTACTGAAGTTAAACTTCCTGAAGCCAAGCT 21721 Query 268944 GTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAA 269003 | ||| || ||||||||| || |||||||| |||||||| | || || |||| Sbjct 21720 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 21662 Query 269004 TAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TCTTCTA------T 269055 | || || || | | ||| || || | | |||| | ||| | | Sbjct 21661 TTGAAACCTACTTCAAGGATCCTAAGGAG-------GCCGATTTCTTGTTCAACGCCATT 21609 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGA 269112 || || ||| | | | | ||||| | || |||||| | | |||||| | |||| Sbjct 21608 GACAA-TATTAAATACATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGA 21550 Query 269113 TAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || ||||| | |||||| || || || ||||| ||| | ||||| || ||||| Sbjct 21549 -AGAA-GCCTTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTC 21492 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 ||||| || || | || ||||||||||| |||||||| | |||||||| |||||| Sbjct 21491 AGTGGGTCATTCGCTTCCATTTTTTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACT 21432 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 ||||| || |||||||| | |||||||||||| | ||| ||| | ||||||||| || Sbjct 21431 TTCTCAAATGAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTA 21372 Query 269291 TTT 269293 ||| Sbjct 21371 TTT 21369 >seq297 Length=71103 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||||||||| ||||| || |||||||| | |||||||||||||||| |||| Sbjct 34771 TGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAATTGT 34712 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||| | || |||||||| || || || ||||||||||| || || || Sbjct 34711 TTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTG 34652 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| || || || | ||| || || ||| || || | || ||||| |||||||| Sbjct 34651 GATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTTTTACCAGTT 34592 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || |||||| || Sbjct 34591 AAAGTCTTGACGAAAATTTGCATTGTG 34565 >seq216 Length=16887 Score = 104 bits (114), Expect = 5e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154 || |||| |||||||||| |||||||| | || || ||||||||||||||||| || Sbjct 10385 ACAGATATTGATGAATGGACAACTTGGAAAACAAGACTGGATCCTGTTTTACATATTGAA 10444 Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214 ||||||||||||| ||||| | || | || ||||| ||||| | ||| || || Sbjct 10445 TTAAGAAGATGGGCTGATATCTTATTAGTTTGTCCATTAACTGCAAATACTTTGGCTAAA 10504 Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 || || ||||| ||| |||| || ||||| | | | ||||| ||||||| Sbjct 10505 ATTTCTTTAGGTATATGTGATAATTTATTAACTAATGTTATCAGAGCTTGGAATA 10559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392985908836