Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05-
08] 367 sequences; 13,991,476 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq307 192 1e-43
seq250 192 1e-43
seq124 159 8e-34
seq297 149 1e-30
seq216 104 5e-17
>seq307
Length=48190
Score = 192 bits (212), Expect = 1e-43
Identities = 622/953 (65%), Gaps = 32/953 (3%)
Strand=Plus/Plus
Query 268705 TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTC 268764
||| || |||||||| | || ||| || |||| | || ||| | |||| || ||
Sbjct 39121 TGTTATGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTC 39180
Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA----AAATT 268820
|| |||||| |||||||| ||| | | | || || |||||||| |||||
Sbjct 39181 CTTCTGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATT 39240
Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880
|| || | |||| | ||| | ||| || | || ||||| || | | |||||
Sbjct 39241 AAATGACA-ATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATG 39299
Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940
|||| ||| ||||| | | || || || | | || || || | || ||||| |
Sbjct 39300 GTATTGTTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTA 39359
Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000
|| || || || ||||| || || ||||| |||||||| || ||||| | |||
Sbjct 39360 AATCATTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTAT 39419
Query 269001 TAATAGATACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAG 269058
|||| || |||||| | | || |||| ||| | | ||| | | || ||
Sbjct 39420 TAATTGAAACTTATGTTAAAGACCCACAA-GAAGCTGATTTCTTGTTTAATGCCATTGAA 39478
Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118
||| | | ||| | | || ||| |||||||||| | |||||||| | |||| |
Sbjct 39479 AACATTCCA-TGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 39537
Query 269119 GCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175
||| | | ||||| || ||||||||||| ||| | |||||||| ||||| ||
Sbjct 39538 TGCTTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGG 39597
Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235
|| ||||| ||||||| |||||||| || ||||| | |||||||| || ||||||||
Sbjct 39598 TTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 39657
Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295
|| |||||||| | || || ||||||||||| || || |||||||| || || |
Sbjct 39658 CAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTC 39717
Query 269296 TAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTG 269354
| ||| | ||||| ||| |||| ||| | || | | ||||| | | |||||
Sbjct 39718 CCA----CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 39773
Query 269355 TTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATA 269414
|| ||| |||| ||||| | | || || ||||| | | | | | ||||||||
Sbjct 39774 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 39833
Query 269415 GCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGT 269474
| | | |||| ||||| || | | || |||||||||| | | | || ||
Sbjct 39834 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGG-- 39891
Query 269475 TTAGTAAAAAA---TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531
|| || ||| || || ||| || || || ||| ||||| ||||| || || |
Sbjct 39892 -TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGG 39950
Query 269532 AAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGT 269591
||||| | || || ||||| ||| | || | | || || ||| ||||| ||||
Sbjct 39951 CTGGTAAAACCAACTTTTTCGAAAAGAGAGTTTCTGATTACCAAAAAGCTGGTGTTATGT 40010
Query 269592 CTA---CTAAAGA---AGAAA---ATATTTTCACTACAGATGCAGAATTCTAA 269635
||| || |||| ||||| | ||||||| |||| ||| ||||||
Sbjct 40011 CTAAAGCTGAAGACAGAGAAACCGGTGCTTTCACTTTTGATGAAGATTTCTAA 40063
>seq250
Length=32566
Score = 192 bits (212), Expect = 1e-43
Identities = 622/953 (65%), Gaps = 32/953 (3%)
Strand=Plus/Plus
Query 268705 TGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTC 268764
||| || |||||||| | || ||| || |||| | || ||| | |||| || ||
Sbjct 28607 TGTTATGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTC 28666
Query 268765 TTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA----AAATT 268820
|| |||||| |||||||| ||| | | | || || |||||||| |||||
Sbjct 28667 CTTCTGGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATT 28726
Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880
|| || | |||| | ||| | ||| || | || ||||| || | | |||||
Sbjct 28727 AAATGACA-ATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATG 28785
Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940
|||| ||| ||||| | | || || || | | || || || | || ||||| |
Sbjct 28786 GTATTGTTGGTGAAAACTTGATTGAAAACTTTTCTGCTGAAGTCCAACTGCCAGAAGCTA 28845
Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000
|| || || || ||||| || || ||||| |||||||| || ||||| | |||
Sbjct 28846 AATCATTCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTAT 28905
Query 269001 TAATAGATACTTATATAGATGATA-ACAACGAAAAGAAAAGACTATTTTCTTCTAT-GAG 269058
|||| || |||||| | | || |||| ||| | | ||| | | || ||
Sbjct 28906 TAATTGAAACTTATGTTAAAGACCCACAA-GAAGCTGATTTCTTGTTTAATGCCATTGAA 28964
Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC 269118
||| | | ||| | | || ||| |||||||||| | |||||||| | |||| |
Sbjct 28965 AACATTCCA-TGTATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGA 29023
Query 269119 GCCTT---ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175
||| | | ||||| || ||||||||||| ||| | |||||||| ||||| ||
Sbjct 29024 TGCTTTATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGG 29083
Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235
|| ||||| ||||||| |||||||| || ||||| | |||||||| || ||||||||
Sbjct 29084 TTCATTTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 29143
Query 269236 TAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295
|| |||||||| | || || ||||||||||| || || |||||||| || || |
Sbjct 29144 CAATGAATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTC 29203
Query 269296 TAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTG 269354
| ||| | ||||| ||| |||| ||| | || | | ||||| | | |||||
Sbjct 29204 CCA----CTTGCAACACAGACCATCTCCAGAAATTGTTGAAAAGATTATTGTTGAAGCTG 29259
Query 269355 TTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATA 269414
|| ||| |||| ||||| | | || || ||||| | | | | | ||||||||
Sbjct 29260 TTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACT 29319
Query 269415 GCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGT 269474
| | | |||| ||||| || | | || |||||||||| | | | || ||
Sbjct 29320 GTGACTTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGG-- 29377
Query 269475 TTAGTAAAAAA---TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAG 269531
|| || ||| || || ||| || || || ||| ||||| ||||| || || |
Sbjct 29378 -TAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGG 29436
Query 269532 AAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGT 269591
||||| | || || ||||| ||| | || | | || || ||| ||||| ||||
Sbjct 29437 CTGGTAAAACCAACTTTTTCGAAAAGAGAGTTTCTGATTACCAAAAAGCTGGTGTTATGT 29496
Query 269592 CTA---CTAAAGA---AGAAA---ATATTTTCACTACAGATGCAGAATTCTAA 269635
||| || |||| ||||| | ||||||| |||| ||| ||||||
Sbjct 29497 CTAAAGCTGAAGACAGAGAAACCGGTGCTTTCACTTTTGATGAAGATTTCTAA 29549
>seq124
Length=102737
Score = 159 bits (176), Expect = 8e-34
Identities = 405/603 (67%), Gaps = 36/603 (6%)
Strand=Plus/Minus
Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771
||||||||| | || ||| || |||| | ||||| | | ||||| || ||||||
Sbjct 21956 TTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTTTGG 21897
Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA 268831
|| | ||||||| | || || | | || || |||||| ||||| |||| |||
Sbjct 21896 ACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAAT--AAAAT--GAA 21841
Query 268832 GAAAGA----AGATTTAT-ATCTTATA--TTCTTGCGTTTTTTGCAGTTAGTGATGGTAT 268884
||||| |||||| | |||| | || | || |||||||| | ||||||||
Sbjct 21840 TAAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTAT 21781
Query 268885 CGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA-GAT 268943
|| || ||||| | || || || || ||| || || | |||||||||||| | |
Sbjct 21780 AGTCAATGAAAACTTGGTTGAAAACTTTTGTACTGAAGTTAAACTTCCTGAAGCCAAGCT 21721
Query 268944 GTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAA 269003
| ||| || ||||||||| || |||||||| |||||||| | || || ||||
Sbjct 21720 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 21662
Query 269004 TAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT--TCTTCTA------T 269055
| || || || | | ||| || || | | |||| | ||| | |
Sbjct 21661 TTGAAACCTACTTCAAGGATCCTAAGGAG-------GCCGATTTCTTGTTCAACGCCATT 21609
Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGA 269112
|| || ||| | | | | ||||| | || |||||| | | |||||| | ||||
Sbjct 21608 GACAA-TATTAAATACATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGA 21550
Query 269113 TAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170
|| ||||| | |||||| || || || ||||| ||| | ||||| || |||||
Sbjct 21549 -AGAA-GCCTTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTC 21492
Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230
||||| || || | || ||||||||||| |||||||| | |||||||| ||||||
Sbjct 21491 AGTGGGTCATTCGCTTCCATTTTTTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACT 21432
Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290
||||| || |||||||| | |||||||||||| | ||| ||| | ||||||||| ||
Sbjct 21431 TTCTCAAATGAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTA 21372
Query 269291 TTT 269293
|||
Sbjct 21371 TTT 21369
>seq297
Length=71103
Score = 149 bits (164), Expect = 1e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || ||||||||||| ||||| || |||||||| | |||||||||||||||| ||||
Sbjct 34771 TGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAATTGT 34712
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||| ||||| | || |||||||| || || || ||||||||||| || || ||
Sbjct 34711 TTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTG 34652
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| ||| || || || | ||| || || ||| || || | || ||||| ||||||||
Sbjct 34651 GATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTTTTACCAGTT 34592
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
| || || || || || |||||| ||
Sbjct 34591 AAAGTCTTGACGAAAATTTGCATTGTG 34565
>seq216
Length=16887
Score = 104 bits (114), Expect = 5e-17
Identities = 128/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 165095 ACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAG 165154
|| |||| |||||||||| |||||||| | || || ||||||||||||||||| ||
Sbjct 10385 ACAGATATTGATGAATGGACAACTTGGAAAACAAGACTGGATCCTGTTTTACATATTGAA 10444
Query 165155 CTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAG 165214
||||||||||||| ||||| | || | || ||||| ||||| | ||| || ||
Sbjct 10445 TTAAGAAGATGGGCTGATATCTTATTAGTTTGTCCATTAACTGCAAATACTTTGGCTAAA 10504
Query 165215 ATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269
|| || ||||| ||| |||| || ||||| | | | ||||| |||||||
Sbjct 10505 ATTTCTTTAGGTATATGTGATAATTTATTAACTAATGTTATCAGAGCTTGGAATA 10559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151392985908836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |