Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq259 275 7e-69 seq132 275 7e-69 seq166 167 3e-36 seq283 87.8 2e-12 >seq259 Length=87679 Score = 275 bits (304), Expect = 7e-69 Identities = 471/681 (69%), Gaps = 32/681 (5%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | ||| | | |||||| ||||| | |||||||| || | |||||||| Sbjct 63496 TTGTTCTTTCAAAGCATCCACATGATCCAAATACACGTGAGCATCACCCATAGTATGAAT 63437 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||||||||| | ||||||||| | |||||||| | | ||||| || ||||| || Sbjct 63436 AAATTCACCACAATCCATATCAACCACATGAGCAATCATCTTAGTTAACAAAGCATAGGA 63377 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 ||| | || ||||| || || || |||||||| ||||| ||||| || ||| || Sbjct 63376 AGCAATGTTGAAAGGAACTCCCAAACCCATATCACAAGATCTCTGATACAATAAACATGA 63317 Query 6990 TAAAATA---------TTGTCTA------TAGCATAAAATTGACACAATACATGACATGG 7034 ||| || || ||| || |||| |||||||| || ||||||||||| Sbjct 63316 TAATTTAGGTTTAGCGTTTTCTGGGAAATTAACATAGAATTGACAAAAGACATGACATGG 63257 Query 7035 AGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATC 7094 ||||||| | | ||| | ||| | ||||||||| ||| |||| | || | |||||| Sbjct 63256 AGGTAAAGCCATTTTATCAAAATCTGGTGGATTCCAGGCACTCATGATTATTCTTCTATC 63197 Query 7095 ATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC 7154 || ||| || || |||||||| | || || ||| || ||||| ||| || || Sbjct 63196 ATATGGGTTGGTCTTTAATTTCTTAATGATATCTTGCAACTGATCATAACCTTGTCCAGT 63137 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||||| || || ||||| | |||| | ||| ||||| ||||||||||| || ||||||| Sbjct 63136 ATAATCAGCATCACAATCTTTATATTCAGCACCAAAGTGTCTCCATTGGAAACCATAAAC 63077 Query 7215 AGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAA---TTA-GATT 7270 || || ||||||||||| ||||||| | |||||||| || |||| | | || Sbjct 63076 TGGTCCCAAATCACCTTCACGACGATGAGTCAATCCTAACTTATCTAAAAACTCACGA-- 63019 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAG 7330 ||||||| | | |||||||| | ||| ||| || | |||| || || || || | Sbjct 63018 --GATCCATTACCTTCCCAAATTTTAACACCTTTGTTGGTTAAAATTTTAGCATCGGTTG 62961 Query 7331 ATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAG 7390 |||| || |||||||| | ||| | | || || |||| | | | || |||| Sbjct 62960 ATCCAGCAATAAACCATAATAATTCATGAATGATACCTTTAGAAAAGACTTTCTTGGTAG 62901 Query 7391 TGAATAAAGGGAATGTA------CTTAAATCATATCT--ATTCT-GTAAACCAAATACTG 7441 | || || || |||||| ||||||| |||| ||| | || | |||| | || Sbjct 62900 TTAACAATGGAAATGTATCATTTGATAAATCAAATCTTAATTGTGGTGGAGCAAAAAGTG 62841 Query 7442 AAAGAGTACCTGTTCCAGTTC 7462 | ||| |||||||| |||| Sbjct 62840 ATTTAGTTCCTGTTCCTGTTC 62820 >seq132 Length=62843 Score = 275 bits (304), Expect = 7e-69 Identities = 471/681 (69%), Gaps = 32/681 (5%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | ||| | | |||||| ||||| | |||||||| || | |||||||| Sbjct 30333 TTGTTCTTTCAAAGCATCCACATGATCCAAATACACGTGAGCATCACCCATAGTATGAAT 30392 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||||||||| | ||||||||| | |||||||| | | ||||| || ||||| || Sbjct 30393 AAATTCACCACAATCCATATCAACCACATGAGCAATCATCTTAGTTAACAAAGCATAGGA 30452 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGA 6989 ||| | || ||||| || || || |||||||| ||||| ||||| || ||| || Sbjct 30453 AGCAATGTTGAAAGGAACTCCCAAACCCATATCACAAGATCTCTGATACAATAAACATGA 30512 Query 6990 TAAAATA---------TTGTCTA------TAGCATAAAATTGACACAATACATGACATGG 7034 ||| || || ||| || |||| |||||||| || ||||||||||| Sbjct 30513 TAATTTAGGTTTAGCGTTTTCTGGGAAATTAACATAGAATTGACAAAAGACATGACATGG 30572 Query 7035 AGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATC 7094 ||||||| | | ||| | ||| | ||||||||| ||| |||| | || | |||||| Sbjct 30573 AGGTAAAGCCATTTTATCAAAATCTGGTGGATTCCAGGCACTCATGATTATTCTTCTATC 30632 Query 7095 ATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC 7154 || ||| || || |||||||| | || || ||| || ||||| ||| || || Sbjct 30633 ATATGGGTTGGTCTTTAATTTCTTAATGATATCTTGCAACTGATCATAACCTTGTCCAGT 30692 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||||| || || ||||| | |||| | ||| ||||| ||||||||||| || ||||||| Sbjct 30693 ATAATCAGCATCACAATCTTTATATTCAGCACCAAAGTGTCTCCATTGGAAACCATAAAC 30752 Query 7215 AGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAA---TTA-GATT 7270 || || ||||||||||| ||||||| | |||||||| || |||| | | || Sbjct 30753 TGGTCCCAAATCACCTTCACGACGATGAGTCAATCCTAACTTATCTAAAAACTCACGA-- 30810 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAG 7330 ||||||| | | |||||||| | ||| ||| || | |||| || || || || | Sbjct 30811 --GATCCATTACCTTCCCAAATTTTAACACCTTTGTTGGTTAAAATTTTAGCATCGGTTG 30868 Query 7331 ATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAG 7390 |||| || |||||||| | ||| | | || || |||| | | | || |||| Sbjct 30869 ATCCAGCAATAAACCATAATAATTCATGAATGATACCTTTAGAAAAGACTTTCTTGGTAG 30928 Query 7391 TGAATAAAGGGAATGTA------CTTAAATCATATCT--ATTCT-GTAAACCAAATACTG 7441 | || || || |||||| ||||||| |||| ||| | || | |||| | || Sbjct 30929 TTAACAATGGAAATGTATCATTTGATAAATCAAATCTTAATTGTGGTGGAGCAAAAAGTG 30988 Query 7442 AAAGAGTACCTGTTCCAGTTC 7462 | ||| |||||||| |||| Sbjct 30989 ATTTAGTTCCTGTTCCTGTTC 31009 >seq166 Length=47476 Score = 167 bits (184), Expect = 3e-36 Identities = 310/454 (68%), Gaps = 21/454 (5%) Strand=Plus/Plus Query 164495 aaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTA 164554 ||||||| | | ||||||| ||||| | ||||| |||| ||||| ||| |||| Sbjct 44995 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCGGGTACTGGTA 45054 Query 164555 AAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTG 164611 |||| ||||| || || | || || | || ||| | || || |||||||| Sbjct 45055 AAACTTTAATTGCCAGAAAATTATCTAAAA-TGTTGAATGGTAAAGAACC--TAAAATTG 45111 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 |||||||||| ||| | |||| |||||||| |||| || |||| ||| || | || | Sbjct 45112 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 45171 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTA 164731 | || | || || |||| |||| | || | |||| || | | | |||||||||| Sbjct 45172 TATTCAAAGATGCCGAAGCAGAATATAAATTAAAAGGTGAAGATTCTGATTTACATGTTA 45231 Query 164732 TTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG------------TGAT---A 164776 || |||||||||| | ||| || ||| |||| || | || |||| | Sbjct 45232 TTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATGGAA 45291 Query 164777 ATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | | || |||| || || ||||| || | || ||||| |||||||| || | Sbjct 45292 CTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATCAAT 45351 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 | |||||||||||| || | ||||||||||| || |||||||||||| ||| || | Sbjct 45352 TGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCATTGT 45411 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930 || |||| ||| |||| ||| | |||| ||||| Sbjct 45412 TAAGACCAGGTAGATTTGAAATTCAAATCGAAAT 45445 >seq283 Length=47260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | ||| | | || || || |||| |||||||| ||||||||| Sbjct 20513 GTCAAAGTTAGAATGAGAACAACCAAGATTCCGCAAATTGGTGATAAATTTGCTTCTAGA 20572 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || ||| | | |||| | || ||||||||||| || | | | Sbjct 20573 CATGGTCAAAAGGGTACTATTGGGGTTACTTATAGACATGAAGATATGCCATTCAGTGCA 20632 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || || ||| | ||||| ||||| |||||| ||||| || ||||| Sbjct 20633 GAAGGTATTGTCCCAGATTTGATTATCAACCCTCATGCTATTCCATCCCGTATGAC 20688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869266437200