Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq307 327 1e-84 seq250 322 5e-83 seq124 230 2e-55 >seq307 Length=48190 Score = 327 bits (362), Expect = 1e-84 Identities = 649/954 (68%), Gaps = 32/954 (3%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176 |||| ||||| |||| || | |||| || || ||| |||| ||| ||||||| Sbjct 40064 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 40005 Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236 || |||||| |||||| |||||| ||||||||||| || || || || |||| | Sbjct 40004 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 39945 Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295 | ||| |||||| ||||| ||||| || | | ||| || | ||| || ||||| Sbjct 39944 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 39886 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | ||||||||||||| || ||| |||| | |||||||||||| || ||||| |||||| Sbjct 39885 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 39826 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || | || || |||||||| | || ||| | |||||| | | || |||||| Sbjct 39825 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 39766 Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469 ||||| || ||| | | || ||||| || | | | ||| || ||| Sbjct 39765 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 39712 Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 | |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || || Sbjct 39711 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 39652 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589 || ||||| ||||| || ||||||||||| ||||| || || || ||||||| || Sbjct 39651 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 39592 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || |||| |||||||| ||||| |||| |||| | ||| || |||||| Sbjct 39591 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 39532 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707 || |||||||| ||||||| || |||||| ||||||| ||| | |||| Sbjct 39531 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 39474 Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 | || || || |||| || ||| | | || | | | Sbjct 39473 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 39415 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||||||| || ||||| ||| || || || || || || || | || Sbjct 39414 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 39355 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| ||| || |||| | |||| || | |||||||||| || || |||||| Sbjct 39354 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 39295 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943 || || ||||| || || | | | ||||||| ||| || || ||||| Sbjct 39294 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 39235 Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003 || |||||||| |||||||| |||||| ||||||||| ||||| ||| || Sbjct 39234 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 39175 Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || |||||||| | | ||||||| |||| |||| | |||||||| || ||| Sbjct 39174 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 39121 >seq250 Length=32566 Score = 322 bits (356), Expect = 5e-83 Identities = 648/954 (68%), Gaps = 32/954 (3%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176 |||| ||||| |||| || | |||| || || ||| |||| ||| ||||||| Sbjct 29550 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 29491 Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236 || |||||| |||||| |||||| ||||||||||| || || || || |||| | Sbjct 29490 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 29431 Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295 | ||| |||||| ||||| ||||| || | | ||| || | ||| || ||||| Sbjct 29430 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 29372 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | ||||||||||||| || ||| |||| | |||||||||||| || ||||| |||||| Sbjct 29371 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 29312 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || | || || |||||||| | || ||| | |||||| | | || |||||| Sbjct 29311 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 29252 Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469 ||||| || ||| | | || ||||| || | | | ||| || ||| Sbjct 29251 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 29198 Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529 | |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || || Sbjct 29197 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 29138 Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589 || ||||| ||||| || ||||||||||| ||||| || || || ||||||| || Sbjct 29137 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 29078 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || |||| |||||||| ||||| |||| |||| | ||| || |||||| Sbjct 29077 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 29018 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707 || |||||||| ||||||| || |||||| ||||||| ||| | |||| Sbjct 29017 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 28960 Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 | || || || |||| || ||| | | || | | | Sbjct 28959 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 28901 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||||||| || ||||| ||| || || || || || || || | || Sbjct 28900 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 28841 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| ||| || || | | |||| || | |||||||||| || || |||||| Sbjct 28840 TCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 28781 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943 || || ||||| || || | | | ||||||| ||| || || ||||| Sbjct 28780 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 28721 Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003 || |||||||| |||||||| |||||| ||||||||| ||||| ||| || Sbjct 28720 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 28661 Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || |||||||| | | ||||||| |||| |||| | |||||||| || ||| Sbjct 28660 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 28607 >seq124 Length=102737 Score = 230 bits (254), Expect = 2e-55 Identities = 596/903 (66%), Gaps = 11/903 (1%) Strand=Plus/Plus Query 21155 TTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAA 21214 |||| |||| |||| ||| | || | |||| |||||| ||||| ||||| || Sbjct 21058 TTATTTTCTGCTTTTTCCATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAG 21117 Query 21215 AAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTT 21273 ||||| || || || |||| |||||| |||||| |||||||||||||| ||| || Sbjct 21118 AAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAGTCACGTTA 21177 Query 21274 AAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAA-ATTCTATATATT 21332 |||| || || | ||| | | || |||||||| || |||| |||| | ||||| Sbjct 21178 TAATACTT-ATCATTACCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATT 21235 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| || |||||||||||||| | ||| || ||||| || | | || | Sbjct 21236 GACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACT 21295 Query 21393 ATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGAT 21452 ||||| ||| || |||||| || || ||| ||| | || | | || || Sbjct 21296 TCTTTTCAATACTAACAGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTAT 21355 Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 | || | | ||| | ||||| ||| |||| || | |||||| ||||||| | Sbjct 21356 TCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGA 21415 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | |||||||| || || |||||||| ||||| || ||||| ||||| |||||||| || | Sbjct 21416 TCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGG 21475 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | || |||| || ||||||||||| |||| ||||||||||| || |||| ||| Sbjct 21476 AAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTG 21535 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 | | | ||||| || |||||| | ||||| | ||| ||||| ||| Sbjct 21536 CAAACAAGGCTTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGT 21595 Query 21693 AATCAATTGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNN 21751 | | ||| | ||||| || || || |||| || || | ||| | | | Sbjct 21596 ATTTAATATTGTCAATGGCGTTGAACAAGA-AATCGGCCTCCTTAGGATCCTTGAAGTAG 21654 Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811 ||| |||| ||||| |||||||| ||| ||||| ||| | Sbjct 21655 GTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTG 21714 Query 21812 TAAAAACATCTT-GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTC 21870 | ||| || ||| || || | | || ||| || | | |||| || | |||||||||| Sbjct 21715 T-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTC 21773 Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT-- 21928 ||| ||||| ||||| || |||||||| || || | || || ||| ||| | Sbjct 21774 ATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTC 21833 Query 21929 -TCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGT 21987 || |||| || |||| |||||| |||||||| || || | |||||| | Sbjct 21834 ATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGC 21893 Query 21988 TGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGG 22047 ||||||||| |||| || || || || | | |||| || ||| |||| ||||||| Sbjct 21894 TGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGG 21953 Query 22048 AAA 22050 ||| Sbjct 21954 AAA 21956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898359905080