Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05-
08] 367 sequences; 13,991,476 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq307 327 1e-84
seq250 322 5e-83
seq124 230 2e-55
>seq307
Length=48190
Score = 327 bits (362), Expect = 1e-84
Identities = 649/954 (68%), Gaps = 32/954 (3%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176
|||| ||||| |||| || | |||| || || ||| |||| ||| |||||||
Sbjct 40064 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 40005
Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236
|| |||||| |||||| |||||| ||||||||||| || || || || |||| |
Sbjct 40004 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 39945
Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295
| ||| |||||| ||||| ||||| || | | ||| || | ||| || |||||
Sbjct 39944 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 39886
Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355
| ||||||||||||| || ||| |||| | |||||||||||| || ||||| ||||||
Sbjct 39885 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 39826
Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415
|| | || || |||||||| | || ||| | |||||| | | || ||||||
Sbjct 39825 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 39766
Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469
||||| || ||| | | || ||||| || | | | ||| || |||
Sbjct 39765 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 39712
Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529
| |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || ||
Sbjct 39711 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 39652
Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589
|| ||||| ||||| || ||||||||||| ||||| || || || ||||||| ||
Sbjct 39651 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 39592
Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649
|||||||| || |||| |||||||| ||||| |||| |||| | ||| || ||||||
Sbjct 39591 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 39532
Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707
|| |||||||| ||||||| || |||||| ||||||| ||| | ||||
Sbjct 39531 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 39474
Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766
| || || || |||| || ||| | | || | | |
Sbjct 39473 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 39415
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||||||| || ||||| ||| || || || || || || || | ||
Sbjct 39414 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 39355
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|||| ||| || |||| | |||| || | |||||||||| || || ||||||
Sbjct 39354 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 39295
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943
|| || ||||| || || | | | ||||||| ||| || || |||||
Sbjct 39294 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 39235
Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003
|| |||||||| |||||||| |||||| ||||||||| ||||| ||| ||
Sbjct 39234 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 39175
Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057
|| |||||||| | | ||||||| |||| |||| | |||||||| || |||
Sbjct 39174 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 39121
>seq250
Length=32566
Score = 322 bits (356), Expect = 5e-83
Identities = 648/954 (68%), Gaps = 32/954 (3%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACA-----TTATCT-TCttt---ttttGACATAA 21176
|||| ||||| |||| || | |||| || || ||| |||| ||| |||||||
Sbjct 29550 TTTAGAAATCTTCATCAAAAGTGAAAGCACCGGTTTCTCTGTCTTCAGCTTTAGACATAA 29491
Query 21177 TTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATG 21236
|| |||||| |||||| |||||| ||||||||||| || || || || |||| |
Sbjct 29490 CACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGG 29431
Query 21237 ATATAGATTCCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGT 21295
| ||| |||||| ||||| ||||| || | | ||| || | ||| || |||||
Sbjct 29430 AAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAA-ACTTTCTTGTTACCCAAG 29372
Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355
| ||||||||||||| || ||| |||| | |||||||||||| || ||||| ||||||
Sbjct 29371 GCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATA 29312
Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415
|| | || || |||||||| | || ||| | |||||| | | || ||||||
Sbjct 29311 CCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCA 29252
Query 21416 ACAATTATATTTATTA----TCCT--AGATGTACTAGGGGGATACAATAATTGTTTAAAC 21469
||||| || ||| | | || ||||| || | | | ||| || |||
Sbjct 29251 ACAATAATCTTTTCAACAATTTCTGGAGATGGTCT---GTGTTGCAAG---TGGGAGAAC 29198
Query 21470 ATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAAT 21529
| |||||| ||||||||| ||| ||||||||||| |||| || |||||||| || ||
Sbjct 29197 AACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAA 29138
Query 21530 GTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAA 21589
|| ||||| ||||| || ||||||||||| ||||| || || || ||||||| ||
Sbjct 29137 GTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTG 29078
Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649
|||||||| || |||| |||||||| ||||| |||| |||| | ||| || ||||||
Sbjct 29077 AAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 29018
Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAA 21707
|| |||||||| ||||||| || |||||| ||||||| ||| | ||||
Sbjct 29017 TCTTGAATCCATTTGATGGCCCATTCAGC--TTTCTTGGTAATACATGGAATGTTTTCAA 28960
Query 21708 TAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766
| || || || |||| || ||| | | || | | |
Sbjct 28959 TGGCATTAAACAAGA-AATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 28901
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||||||| || ||||| ||| || || || || || || || | ||
Sbjct 28900 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 28841
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|||| ||| || || | | |||| || | |||||||||| || || ||||||
Sbjct 28840 TCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 28781
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT--- 21943
|| || ||||| || || | | | ||||||| ||| || || |||||
Sbjct 28780 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 28721
Query 21944 TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCA 22003
|| |||||||| |||||||| |||||| ||||||||| ||||| ||| ||
Sbjct 28720 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 28661
Query 22004 ATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057
|| |||||||| | | ||||||| |||| |||| | |||||||| || |||
Sbjct 28660 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACA 28607
>seq124
Length=102737
Score = 230 bits (254), Expect = 2e-55
Identities = 596/903 (66%), Gaps = 11/903 (1%)
Strand=Plus/Plus
Query 21155 TTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAA 21214
|||| |||| |||| ||| | || | |||| |||||| ||||| ||||| ||
Sbjct 21058 TTATTTTCTGCTTTTTCCATGACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAG 21117
Query 21215 AAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATTT 21273
||||| || || || |||| |||||| |||||| |||||||||||||| ||| ||
Sbjct 21118 AAATTGGTTTTACCGGCCAAGGATATATTTTCCATGAAATCAAATGGATTAGTCACGTTA 21177
Query 21274 AAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAA-ATTCTATATATT 21332
|||| || || | ||| | | || |||||||| || |||| |||| | |||||
Sbjct 21178 TAATACTT-ATCATTACCAAAAGCAACCAACAATCTATCGGC-ACAATATTCCACATATT 21235
Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392
||||||| || |||||||||||||| | ||| || ||||| || | | || |
Sbjct 21236 GACACATCAAATCACAATTCATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACT 21295
Query 21393 ATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGAT 21452
||||| ||| || |||||| || || ||| ||| | || | | || ||
Sbjct 21296 TCTTTTCAATACTAACAGCTTCAGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTAT 21355
Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512
| || | | ||| | ||||| ||| |||| || | |||||| ||||||| |
Sbjct 21356 TCTCCAAGTATGAAAATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGA 21415
Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572
| |||||||| || || |||||||| ||||| || ||||| ||||| |||||||| || |
Sbjct 21416 TCAATTCATTTGAGAAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGG 21475
Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632
| || |||| || ||||||||||| |||| ||||||||||| || |||| |||
Sbjct 21476 AAGCGAATGACCCACTGAAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTG 21535
Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692
| | | ||||| || |||||| | ||||| | ||| ||||| |||
Sbjct 21536 CAAACAAGGCTTCTTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGT 21595
Query 21693 AATCAATTGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNN 21751
| | ||| | ||||| || || || |||| || || | ||| | | |
Sbjct 21596 ATTTAATATTGTCAATGGCGTTGAACAAGA-AATCGGCCTCCTTAGGATCCTTGAAGTAG 21654
Query 21752 NNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCG 21811
||| |||| ||||| |||||||| ||| ||||| ||| |
Sbjct 21655 GTTTCAATTAAAAGGGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTG 21714
Query 21812 TAAAAACATCTT-GCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTC 21870
| ||| || ||| || || | | || ||| || | | |||| || | ||||||||||
Sbjct 21715 T-AAACCAGCTTGGCTTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTC 21773
Query 21871 ATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGT-- 21928
||| ||||| ||||| || |||||||| || || | || || ||| ||| |
Sbjct 21774 ATTGACTATACCATCTGATGCAGCAAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTC 21833
Query 21929 -TCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGT 21987
|| |||| || |||| |||||| |||||||| || || | |||||| |
Sbjct 21834 ATCTTTATTCATTTTATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGC 21893
Query 21988 TGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGG 22047
||||||||| |||| || || || || | | |||| || ||| |||| |||||||
Sbjct 21894 TGTCCAAAATGATGCAACAGATTTCTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGG 21953
Query 22048 AAA 22050
|||
Sbjct 21954 AAA 21956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531898359905080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |