Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq181 143 3e-29 >seq181 Length=15068 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 139268 TGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCA 139327 || ||||||||| | ||||| |||| || || || | || ||||||||| || || Sbjct 3430 TGGACCATGATAGACAGCATAATTAGCAGAAATGTTAGCCAACAATGCTTGTGCAGTACA 3489 Query 139328 GATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCT 139387 ||| ||| || ||||| |||||| ||||||| || ||||||||||||| ||||| | Sbjct 3490 GATATTAGAAGTAGCTTTTTCTCTTTTAATATGTTGTTCTCTAGTTTGTAAAGCTAAACG 3549 Query 139388 GTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCT 139447 | || || |||||| || || || ||| |||||||| || || || ||||| Sbjct 3550 TAAAGCTGGTTTGCCTAATCTATCTTTAGAAATACCAACAATTCTTCCTGGGATTTTTCT 3609 Query 139448 CTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAAT 139507 ||| || || ||||| || ||||||||||| ||||| || || || | |||| Sbjct 3610 TGCATATTTAGATGAAGTTGCGAAAAATGCAGCATGTGGACCACCATAACCAAATGGAAC 3669 Query 139508 ACCAAACCTTTGCATACTACCTACAGCAATATCA 139541 |||||| ||||| | |||| | ||||||||| Sbjct 3670 ACCAAATCTTTGAGAAGTACCCAATGCAATATCA 3703 Score = 136 bits (150), Expect = 5e-27 Identities = 517/792 (65%), Gaps = 31/792 (4%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 |||||| | | ||||| | |||| || || || || ||||| ||||| ||||| Sbjct 2306 AATGGTTTTAAATGTTCTTTAACACAAACTGGTGCTTGACCTGGACCACCACCACCATGA 2365 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 | | || || ||||| | ||| | |||||| ||||| ||||| | |||| ||| Sbjct 2366 CTCAAAGCAAAAGTTTTATGAATATTCAAATGACAAACATCAGCACCTAAATCACCTGGA 2425 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 | || ||| || || ||||| | ||| |||||||| ||||| || |||||||| Sbjct 2426 GAAGTTAAACCAACTTGAGCATTCATATTGGCACCATCAAGATAAACTAAACCACCATGT 2485 Query 138342 TCATGAACGATCTTACATATCTGTCT-GATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 |||||||| || | | ||| || ||| || || |||||||| ||||| ||| ||||| Sbjct 2486 TCATGAACAATATCA-ATAGCTCTCTTGACACCTGGTTCAAATAAACCATAAGTAGATGG 2544 Query 138401 ATATGTAATCATAATACATGA-GAGTT--CA-AATGTATTCATGATTGCTTTCTTCTCTA 138456 ||| |||||||||||| | | |||| || |||| || | | ||||| | || Sbjct 2545 ATAAGTAATCATAATAGAACACAAGTTAGCAGCATGTTTT--TCA--GCTTTAGCTTGTA 2600 Query 138457 GATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTG 138516 ||||| | || || |||| | ||| || || |||||||||| || | Sbjct 2601 AATCTTCTAAATCAATAGAACCATTAGACAAACATTTAACTGGAACAACTTTCAAACCAG 2660 Query 138517 CCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACT--CTGGTATCAGACATACATT 138574 ||| | ||| ||| |||||||| ||||| || ||| |||| |||| ||| | ||| Sbjct 2661 ACATAGCAGCAGAAGCTGGATTAGTACCATGAGC--ACTAACTGGAATCAAACAAATATT 2718 Query 138575 TCTTTTATCA---TCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATA 138631 ||||| ||| || || || ||||||| || ||| | | | || | ||| Sbjct 2719 TCTTTGTTCATATTCACCACGAGATTTATGATATTCTCTAATTAATGATAAACCAGTATA 2778 Query 138632 CTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||||| || | || | || || | | ||| ||||||||| || |||||| Sbjct 2779 TTCACCTTGAGCACCAGAATTTGGCATAGAAGTAGTAGCATCAAAACCAGTAATATCATT 2838 Query 138692 TAACCATTTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATC-ATAGGTG 138750 || ||| | || ||| | |||| | || |||| || || || ||| || || | Sbjct 2839 CAAATCTTTTTCAAATTCACCAATTAATTCTTTATAA-CCTTGAGCTTGATCAATTGGAG 2897 Query 138751 TATGTGGATGCA---CGTTGGCAAATTCTTCCCAT-GACACAGGCATCAGTTCTGCTGCT 138806 | |||||| | ||| ||| | | ||| || | || || ||| | | Sbjct 2898 CAAATGGATGAATAGAATTG--AAA--CCTGGCATGGATAAAGTTTGCATTTCAACAGTA 2953 Query 138807 GCATTTAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATC- 138865 ||||| | |||||| || || ||| | ||||| ||||| || |||| || ||||| Sbjct 2954 GCATTCAATTTCATAGTACAGGAACCTAATGGAATCATACTATCAGCTAAAGATAAATCC 3013 Query 138866 -TTTAGAGCATAACTCATAGATATATCTCATCATGTCAGTTTCACTGTGATACTTATTGA 138924 ||| | ||| || | |||||||| |||| |||||||| |||| | |||| Sbjct 3014 ATTTTTTG--TAAAGAATGTAAATATCTCAACATGGCAGTTTCAGAATGATGAGTGTTGA 3071 Query 138925 ATACTTCCTGAG 138936 | ||||| |||| Sbjct 3072 AAACTTCATGAG 3083 Score = 89.7 bits (98), Expect = 6e-13 Identities = 178/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || | || || || |||||||||||| ||| || || || || || || Sbjct 4036 CATGGCTTCCCCAGCAGCGGTACCTTCATCTAATAAAGAAGCATTAGCCATGTCCAAACC 4095 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 |||||| || || | |||||||| || || || | | ||||| || ||||| || Sbjct 4096 TGTAAGGGAAGTAATTAAAGTTTGGTAGTTCAACAAGGAATTTAATCTACCTTGAGAAAT 4155 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 || | |||||| || |||||||| || ||||| ||| ||||||| |||| || Sbjct 4156 TTCTGGTTGATATGGTGTGTAAGAAGTATACCATTCTGGAGATTCAAGAAGATTTCTTTG 4215 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAAGACTAGGTTTTACTTT 140098 || || || ||| |||||| || || |||| ||| || | | | ||||| ||| Sbjct 4216 AATAACAGGTGGTAAAATGGTACCGGCATAACCTTTACCAATGA-AGGATTTTTTATTTT 4274 Query 140099 GTTTGCTTTTGCTATATTTTT 140119 ||| || |||| |||||| Sbjct 4275 ATTTTTATTAGCTA-ATTTTT 4294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995743844840