Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq307 298 8e-76 seq250 293 3e-74 seq124 185 1e-41 seq106 138 2e-27 seq297 134 2e-26 >seq307 Length=48190 Score = 298 bits (330), Expect = 8e-76 Identities = 605/887 (68%), Gaps = 28/887 (3%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| ||| || ||| | || ||||| || || || || || |||| || || Sbjct 40000 AGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAAT 39941 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977 | ||| ||||| ||||| ||||| || ||| ||| ||||| || | Sbjct 39940 ATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTT--CTTGTTACCCAAGGCA 39883 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 ||||||||||||| || ||| |||| |||||||| ||||||| || || |||||||| Sbjct 39882 AATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCC 39823 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | || |||| || ||||||||| | | | ||||||| || | ||||||| || Sbjct 39822 AATAAA--GAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 39765 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATT-TATTAATT--ATGTGATTATAATATA 18152 || || ||| || | || ||| || | | || | ||| | | | Sbjct 39764 CAATAATCTTTTCAACAAT---TTCTGGAGATGGTCTGTGTTGCAAGTGGG---AGAACA 39711 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 | ||||| ||||||||||| ||||||||||||||||| | || ||||| || || | Sbjct 39710 ACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAG 39651 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || || ||||| | |||||| ||||| | ||| || || || || || || | | Sbjct 39650 TCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGA 39591 Query 18273 AGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCA---AAACTGTATTTA 18328 |||| ||||| |||| ||| || || || | |||||||||||| ||| | |||| Sbjct 39590 AGAAAATACCTTCAATAGCA-GCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 39532 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | || | |||||||| |||||||| ||| ||||| || || | || Sbjct 39531 T--CTT-GAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCA 39475 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || ||||||||||| ||| ||||| | ||||| | |||||| || ||||| ||| Sbjct 39474 ATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 39415 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||||||||| ||| ||||||| || || |||| ||| || ||| |||| Sbjct 39414 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 39355 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 || || ||| | ||| | |||| |||| | ||| || ||| ||| ||||| ||| Sbjct 39354 TCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 39295 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GA 18625 | || |||||||| || ||||| || |||| ||||||||| || || | Sbjct 39294 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 39235 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||||| ||||| | |||||| || |||||||||||| | ||||| || || | | Sbjct 39234 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 39175 Query 18686 TCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||||| | ||| || | || | || || | || || || ||||| Sbjct 39174 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 39128 >seq250 Length=32566 Score = 293 bits (324), Expect = 3e-74 Identities = 604/887 (68%), Gaps = 28/887 (3%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| ||| || ||| | || ||||| || || || || || |||| || || Sbjct 29486 AGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAAT 29427 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977 | ||| ||||| ||||| ||||| || ||| ||| ||||| || | Sbjct 29426 ATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTT--CTTGTTACCCAAGGCA 29369 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 ||||||||||||| || ||| |||| |||||||| ||||||| || || |||||||| Sbjct 29368 AATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCC 29309 Query 18038 AGTAGTCTGAAA--GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | || |||| || ||||||||| | | | ||||||| || | ||||||| || Sbjct 29308 AATAAA--GAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 29251 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATT-TATTAATT--ATGTGATTATAATATA 18152 || || ||| || | || ||| || | | || | ||| | | | Sbjct 29250 CAATAATCTTTTCAACAAT---TTCTGGAGATGGTCTGTGTTGCAAGTGGG---AGAACA 29197 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 | ||||| ||||||||||| ||||||||||||||||| | || ||||| || || | Sbjct 29196 ACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAG 29137 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || || ||||| | |||||| ||||| | ||| || || || || || || | | Sbjct 29136 TCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGA 29077 Query 18273 AGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCA---AAACTGTATTTA 18328 |||| ||||| |||| ||| || || || | |||||||||||| ||| | |||| Sbjct 29076 AGAAAATACCTTCAATAGCA-GCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 29018 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | || | |||||||| |||||||| ||| ||||| || || | || Sbjct 29017 T--CTT-GAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCA 28961 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || ||||||||||| ||| ||||| | ||||| | |||||| || ||||| ||| Sbjct 28960 ATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAA 28901 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||||||||| ||| ||||||| || || |||| ||| || ||| |||| Sbjct 28900 GAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCT 28841 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 || || ||| | || | |||| |||| | ||| || ||| ||| ||||| ||| Sbjct 28840 TCTGGCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCA 28781 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GA 18625 | || |||||||| || ||||| || |||| ||||||||| || || | Sbjct 28780 GAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTG 28721 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||||| ||||| | |||||| || |||||||||||| | ||||| || || | | Sbjct 28720 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCT 28661 Query 18686 TCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||||| | ||| || | || | || || | || || || ||||| Sbjct 28660 TCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 28614 >seq124 Length=102737 Score = 185 bits (204), Expect = 1e-41 Identities = 552/840 (66%), Gaps = 32/840 (4%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||| ||| ||| || ||| | || || |||||||| || || || |||| ||||| Sbjct 21084 AGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATAT 21143 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | ||| ||||||||||||||||| |||||||| || || | || | Sbjct 21144 ATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAAC 21203 Query 17980 TAATAATCTATCTGCTACAA-ATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 || |||||||| || |||| |||| |||||||| |||||||||| ||||||||||| | Sbjct 21204 CAACAATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCA 21262 Query 18039 GTAGTCTGAAA--GGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCTT 18095 | |||| || || |||||| | || | |||||| || || ||||| || Sbjct 21263 --ACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTT-TCAATACTAACAGCTTCAG 21319 Query 18096 TTATTATGTT---TATTACCCTAGATTTTGGCAATTTATT----AATTATGTGATTATAA 18148 | || || || ||| | || | ||| ||||| || |||| || Sbjct 21320 TGATAATCTTTTCTATAATGGAAGGATCCGGC---TTATTCTCCAAGTATG-------AA 21369 Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||| |||||| ||| |||| ||||| | |||||| || || | || ||||| || Sbjct 21370 AATAGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAG 21429 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||| | ||||||||||| | |||||| || || ||||| | | Sbjct 21430 AAAGTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCA 21489 Query 18269 GAAAAGAATATACCCTCAA-CGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT 18327 ||||| || || |||| ||| || || || | |||||||| ||||| | || Sbjct 21490 CTGAAGAAAATGCCTTCAATAGCA-GCAAATGCCACCAATCTTTCTGCAAACAAGGCTTC 21548 Query 18328 ATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 | | | |||||| | ||||| ||| ||| || | ||| | || Sbjct 21549 TTCGTCTTGAATCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTC 21608 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAA 18447 || || || ||||| ||| || || | ||| || | || || || ||||| | Sbjct 21609 AATGGCGTTGAACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAG 21668 Query 18448 AGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGC 18507 ||||| |||| ||||| || ||||||| ||||| || | |||| | | || Sbjct 21669 GGAATATGTTTCTGAATGGATATTTTCCATCATGATCTGGAATTTGTAAACCAGCTTGGC 21728 Query 18508 CTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTC 18567 || ||| || || || || |||| |||| ||||| || ||||| |||||||| || Sbjct 21729 TTCAGGAAGTTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATC 21788 Query 18568 AGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCA---TTATCCTTGA 18623 | | || ||||| || ||||| | || | |||||| | ||||| |||| | | Sbjct 21789 TGATGCAGCAAAAAAGGCTAAAAC-TCTTGAGATGAAAAATCTTTCATCTTTATTCATTT 21847 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 ||| | ||| ||||| | |||||| | |||| |||||| | ||||||||| |||| Sbjct 21848 TATTTTCCCAATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATG 21907 >seq106 Length=24021 Score = 138 bits (152), Expect = 2e-27 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || ||||| ||||||||||| || ||||||||| Sbjct 4374 AAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCC 4315 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| |||||| ||||| |||||||| || || ||||| Sbjct 4314 TCCGACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 4255 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| |||||||| || || || Sbjct 4254 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 4195 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || || || || ||||| ||||| |||| Sbjct 4194 A--ACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 4143 >seq297 Length=71103 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || || ||||| |||||||| || || ||||| ||| ||| Sbjct 34568 AATGCAAATTTTCGTCAAGACTTTAACTGGTAAAACTATCACTTTGGAAGTTGAATCTTC 34627 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| ||| ||||| |||||||||||||| || || ||||| || Sbjct 34628 TGACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCA 34687 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| || ||||| || | ||||| ||||| || || || || || Sbjct 34688 ACAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAA 34747 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || || || ||||| ||||| ||| Sbjct 34748 CATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 34796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868642537200