Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq307 262 8e-65 seq250 257 3e-63 seq124 181 2e-40 seq106 159 7e-34 seq297 149 1e-30 >seq307 Length=48190 Score = 262 bits (290), Expect = 8e-65 Identities = 539/804 (67%), Gaps = 14/804 (2%) Strand=Plus/Minus Query 49642 CATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATAC 49701 || ||||||||||||| || ||| ||||||||||||| |||| || ||||| ||||||| Sbjct 39884 CAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATAC 39825 Query 49702 CCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtt 49761 ||||||| || ||| | |||||| | | |||||||||| | || ||||||| Sbjct 39824 CCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 39765 Query 49762 taattatcataattatattattttttgataatttatatttaatatgattcgcatatatta 49821 ||| ||| | || | |||| | || | | | | | | | | | | | | Sbjct 39764 CAATAATCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACA 39708 Query 49822 aACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 49881 |||| |||||||||||||||||||| || || ||| | || |||||||| ||||| | Sbjct 39707 AACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCA 39648 Query 49882 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941 | |||||||| || ||||||||||| | ||| || || || ||||| || | |||| Sbjct 39647 AACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGA 39588 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---AT 49998 | ||||| || | | ||||| || | | |||| | || | ||| ||| || Sbjct 39587 AAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTAT 39531 Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 || ||||| || || ||||| || ||||| || | ||| | || || ||||| || | Sbjct 39530 CTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGG 39471 Query 50059 CTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAAT 50118 | ||||| || || ||| | ||||||||||||| Sbjct 39470 CATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAAT 39411 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 ||||||||||||| | |||||| ||||| || ||| ||| | | ||||||| Sbjct 39410 ACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTG 39351 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 || ||||||| | | || ||||| || || ||| |||||||||||||| | Sbjct 39350 GCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAG 39291 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT----T 50294 | ||||| || |||||||| || ||||| ||||||||| || ||||| || | Sbjct 39290 CAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGT 39231 Query 50295 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACG 50354 ||| | || ||| ||| || |||||| |||||||| ||||| || || ||| || Sbjct 39230 TCCAATCATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCG 39172 Query 50355 GATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTA 50414 | ||||||||| | | | || ||| || || ||| ||||| | ||||| || Sbjct 39171 GCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGT 39112 Query 50415 GTAtttttttCTAATATCGGTTCT 50438 | |||| || ||||| |||||| Sbjct 39111 TTGTTTTCTTGTAATAATGGTTCT 39088 >seq250 Length=32566 Score = 257 bits (284), Expect = 3e-63 Identities = 538/804 (67%), Gaps = 14/804 (2%) Strand=Plus/Minus Query 49642 CATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATAC 49701 || ||||||||||||| || ||| ||||||||||||| |||| || ||||| ||||||| Sbjct 29370 CAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATAC 29311 Query 49702 CCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtt 49761 ||||||| || ||| | |||||| | | |||||||||| | || ||||||| Sbjct 29310 CCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAA 29251 Query 49762 taattatcataattatattattttttgataatttatatttaatatgattcgcatatatta 49821 ||| ||| | || | |||| | || | | | | | | | | | | | | Sbjct 29250 CAATAATCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACA 29194 Query 49822 aACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 49881 |||| |||||||||||||||||||| || || ||| | || |||||||| ||||| | Sbjct 29193 AACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCA 29134 Query 49882 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 49941 | |||||||| || ||||||||||| | ||| || || || ||||| || | |||| Sbjct 29133 AACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGA 29074 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---AT 49998 | ||||| || | | ||||| || | | |||| | || | ||| ||| || Sbjct 29073 AAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTAT 29017 Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 || ||||| || || ||||| || ||||| || | ||| | || || ||||| || | Sbjct 29016 CTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGG 28957 Query 50059 CTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAAT 50118 | ||||| || || ||| | ||||||||||||| Sbjct 28956 CATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAAT 28897 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 ||||||||||||| | |||||| ||||| || ||| ||| | | ||||||| Sbjct 28896 ACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTG 28837 Query 50179 AATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATG 50238 || ||||| | | | || ||||| || || ||| |||||||||||||| | Sbjct 28836 GCAGTTGGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAG 28777 Query 50239 CTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT----T 50294 | ||||| || |||||||| || ||||| ||||||||| || ||||| || | Sbjct 28776 CAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGT 28717 Query 50295 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACG 50354 ||| | || ||| ||| || |||||| |||||||| ||||| || || ||| || Sbjct 28716 TCCAATCATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCG 28658 Query 50355 GATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTA 50414 | ||||||||| | | | || ||| || || ||| ||||| | ||||| || Sbjct 28657 GCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGT 28598 Query 50415 GTAtttttttCTAATATCGGTTCT 50438 | |||| || ||||| |||||| Sbjct 28597 TTGTTTTCTTGTAATAATGGTTCT 28574 >seq124 Length=102737 Score = 181 bits (200), Expect = 2e-40 Identities = 515/785 (66%), Gaps = 22/785 (3%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650 ||| |||||||||||||| | |||||||| || || || ||| | || || | Sbjct 21150 CATGAAATCAAATGGATTAGTCACGTTATAATACTTATCAT-TACCAAAAGCAACCAACA 21208 Query 49651 ATCTATCGGCTACAA-ATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 |||||||||| |||| |||| |||||||| |||| || ||||||||||||||||| || Sbjct 21209 ATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 21267 Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat 49768 || ||| | |||||| | || | ||||||| | || ||||||| | || || Sbjct 21268 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAAT 21326 Query 49769 cataattatattattttttgataatttatattt----aatatgattcgcatatattaaAC 49824 | | || ||| || ||| |||| | ||||| | ||| ||||| Sbjct 21327 CTT--TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGA-----AAATAGTAAAC 21379 Query 49825 ATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 49884 | ||| |||| || || | ||| ||||||||| | || |||||||| |||||||| | Sbjct 21380 AAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAAC 21439 Query 49885 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 49944 ||||||| || ||||| ||||| | |||||| || || || || | | ||||| | Sbjct 21440 CTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAAA 21499 Query 49945 TACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA 50004 | || || | | |||||||| | | |||| || |||||| || || ||| | Sbjct 21500 TGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAA 21559 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| | ||||||||||||||||||| || | ||||| || || || || | Sbjct 21560 TCCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGA 21619 Query 50065 ATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 | || || || | ||||| | ||||| ||| Sbjct 21620 ACAAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTT 21679 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACT 50184 | ||||| | | |||||| || || ||| |||| | | ||||| | | | Sbjct 21680 CTGAATGGATATTTTCCATCATGATCTGGAATTTGTAAACCAGCTTGGCTTCAGGAAGTT 21739 Query 50185 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 50244 |||||| | | | || |||||| || || ||| || |||||||| ||||| || | Sbjct 21740 TAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAA 21799 Query 50245 AGAATGCTAAAACGTATTTA-AT--AAAATGTTT-TTCATTATCTTTTAAATTTTCCCAA 50300 | || |||||||| | || | || ||||| ||| || |||| || |||||||||| Sbjct 21800 AAAAGGCTAAAAC-TCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCAA 21858 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 |||| ||| || || || | ||||||| ||||||||||||||| || ||||| Sbjct 21859 TCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTTC 21918 Query 50361 TTATA 50365 || || Sbjct 21919 TTGTA 21923 >seq106 Length=24021 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || || |||| || || ||| || || ||||| Sbjct 4144 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGA 4203 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 4204 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 4263 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| |||||| ||| ||||| || | || || ||||| || Sbjct 4264 AATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGAC 4323 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | ||||| |||||||||||||| || || | || || ||||| || Sbjct 4324 TTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 4374 >seq297 Length=71103 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | || || || || ||||||| ||||| || || || || Sbjct 34799 AAAACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTC 34740 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| | || || |||||||||||||| || || ||||| |||||||| || Sbjct 34739 AGACAAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGG 34680 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||| ||||| ||| || ||| || | || || ||||| Sbjct 34679 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTC 34620 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || |||||||||||||| || || | || || |||||| Sbjct 34619 AACTTCCAAAGTGATAGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATT 34568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475370790450