Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq307 273 4e-68 seq250 268 2e-66 seq124 197 2e-45 seq297 161 2e-34 seq106 152 9e-32 >seq307 Length=48190 Score = 273 bits (302), Expect = 4e-68 Identities = 608/918 (66%), Gaps = 16/918 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||| ||||||||| | |||||||||||||| ||||| || | || || || Sbjct 39997 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 39938 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||| ||||| ||||| || | ||| ||| ||| | | || | || || ||| Sbjct 39937 TTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCT-TGTTACCCAAGGCAAATA 39879 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||| ||||||||||||| |||| || ||||| ||||||||||||| Sbjct 39878 ATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAATA 39819 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || ||| | |||||| | | |||||||||| | || ||||||| ||| | Sbjct 39818 AAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAATAA 39759 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 || | || | |||| | || | | | | | | | | | | | ||||| | Sbjct 39758 TCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACAAACAAG 39702 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 ||||||| |||||||||||||| || ||| | || |||||||| ||||| || |||| Sbjct 39701 CAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACCTG 39642 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 |||| || ||||||||||| | ||| || || || ||||| || | ||||| |||| Sbjct 39641 GCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAATAC 39582 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAAAA 39306 | || | | ||||| || | | |||| | || | ||| ||| |||| || Sbjct 39581 CTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTATCTTGAA 39525 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || |||||||| || ||||| || | ||| | || || ||||| || || |||| Sbjct 39524 TCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAA 39465 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 | || || ||||||||||| Sbjct 39464 ACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTT 39405 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486 ||||||| | |||||| ||||| || ||| ||| | ||||||| | Sbjct 39404 CAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTT 39345 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 | ||||||| | | || ||||| || || ||| |||||||||||||| || |||| Sbjct 39344 GGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGA 39285 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAA 39602 | || |||||||| || ||||| ||||||||| || ||||| || |||| | Sbjct 39284 AAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGTTCCAAT 39225 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 || ||| ||| || |||||| |||||||| ||||| || || ||| ||| |||| Sbjct 39224 CATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTT 39166 Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAttt 39722 ||||| | | | || ||| || || ||| ||||| | ||||| || | ||| Sbjct 39165 TTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGTTTGTTT 39106 Query 39723 ttttCTAATATCGGTTCT 39740 | || ||||| |||||| Sbjct 39105 TCTTGTAATAATGGTTCT 39088 >seq250 Length=32566 Score = 268 bits (296), Expect = 2e-66 Identities = 607/918 (66%), Gaps = 16/918 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||| ||||||||| | |||||||||||||| ||||| || | || || || Sbjct 29483 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 29424 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||| ||||| ||||| || | ||| ||| ||| | | || | || || ||| Sbjct 29423 TTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCT-TGTTACCCAAGGCAAATA 29365 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||| ||||||||||||| |||| || ||||| ||||||||||||| Sbjct 29364 ATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAATA 29305 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || ||| | |||||| | | |||||||||| | || ||||||| ||| | Sbjct 29304 AAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAATAA 29245 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 || | || | |||| | || | | | | | | | | | | | ||||| | Sbjct 29244 TCTT--TTCAACAATTTCTGGAGATGGTCTGTGTTGCAAG-TGGGAGAACAACAAACAAG 29188 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 ||||||| |||||||||||||| || ||| | || |||||||| ||||| || |||| Sbjct 29187 CAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACCTG 29128 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 |||| || ||||||||||| | ||| || || || ||||| || | ||||| |||| Sbjct 29127 GCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAATAC 29068 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAAAA 39306 | || | | ||||| || | | |||| | || | ||| ||| |||| || Sbjct 29067 CTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTATCTTGAA 29011 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || |||||||| || ||||| || | ||| | || || ||||| || || |||| Sbjct 29010 TCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAA 28951 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 | || || ||||||||||| Sbjct 28950 ACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTT 28891 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486 ||||||| | |||||| ||||| || ||| ||| | ||||||| | Sbjct 28890 CAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTT 28831 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 | ||||| | | | || ||||| || || ||| |||||||||||||| || |||| Sbjct 28830 GGACTTCAGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGA 28771 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT----TTCCCAA 39602 | || |||||||| || ||||| ||||||||| || ||||| || |||| | Sbjct 28770 AAAAGGCTAAAACTCTAGAAACAAAATATTTTTCATTGTCATTTAATTTGTTGTTCCAAT 28711 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 || ||| ||| || |||||| |||||||| ||||| || || ||| ||| |||| Sbjct 28710 CATCCAA-ATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTT 28652 Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAttt 39722 ||||| | | | || ||| || || ||| ||||| | ||||| || | ||| Sbjct 28651 TTATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATAACGACGTTTGTTT 28592 Query 39723 ttttCTAATATCGGTTCT 39740 | || ||||| |||||| Sbjct 28591 TCTTGTAATAATGGTTCT 28574 >seq124 Length=102737 Score = 197 bits (218), Expect = 2e-45 Identities = 354/508 (70%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 ||||||| ||||| ||| | ||||| || || || ||||| || | || ||||| | Sbjct 21089 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 21148 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| |||||||||||||| | |||||||| || || || ||| | || || Sbjct 21149 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCAT-TACCAAAAGCAACCAAC 21207 Query 38952 AATCTATCGGCCACAA-ATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||||| |||| |||| |||||||| |||| || ||||||||||||||||| || Sbjct 21208 AATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAA 21266 Query 39011 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || ||| | |||||| | || | ||||||| | || ||||||| | || | Sbjct 21267 AGAAACTGGAAGCGCATCACTGAAGTACTTCTTTT-CAATACTAACAGCTTCAGTGATAA 21325 Query 39070 tcataattatattattttttgataatttatattt----aatatgattcgcatataGTAAA 39125 || | || ||| || ||| |||| | ||||| | |||||||| Sbjct 21326 TCTT--TTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGA-----AAATAGTAAA 21378 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||| |||| || || | ||||||||||||| | || |||||||| |||||||| Sbjct 21379 CAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAA 21438 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| || ||||| ||||| | |||||| || || || || | | ||||| Sbjct 21439 CCTGGCATCAACCCTCTTTTTTTCAACCAAAAAATGGAAGCGAATGACCCACTGAAGAAA 21498 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 || || || | | |||||||| | | |||| || |||||| || || ||| | Sbjct 21499 ATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA 21558 Query 39306 ATCCAATTTATGGCCCAATCTGCttttt 39333 ||||| | || |||||||||||||||| Sbjct 21559 ATCCATCTAATAGCCCAATCTGCTTTTT 21586 >seq297 Length=71103 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || || ||||||| ||||| ||| || || || Sbjct 34799 AAAACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTC 34740 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || |||| || |||||||||||||| ||||| ||||| ||||| || || Sbjct 34739 AGACAAGGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGG 34680 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||||||||| ||||| ||| || ||| || || || || ||||| Sbjct 34679 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTC 34620 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| || |||||||||||||| || || | ||| || |||||| Sbjct 34619 AACTTCCAAAGTGATAGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATT 34568 >seq106 Length=24021 Score = 152 bits (168), Expect = 9e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || || |||| || || || || Sbjct 4136 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTG 4195 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||||||||||||||| || ||||| ||||| Sbjct 4196 TAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 4255 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || |||||||| ||||| |||||| ||| ||||| || || || || Sbjct 4256 TCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAG 4315 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||||| |||||||||||||| || || | ||| || ||||| || Sbjct 4316 GATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 4374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131847688600