Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq259 163 4e-35 seq132 163 4e-35 seq311 96.9 4e-15 seq241 93.3 5e-14 >seq259 Length=87679 Score = 163 bits (180), Expect = 4e-35 Identities = 386/574 (67%), Gaps = 27/574 (5%) Strand=Plus/Plus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| || ||||| ||| | ||| |||| | | ||||||| Sbjct 62936 GAATTATTATGGTTTATTGCTGGATCAACCGATGCTAAAATTTTAACCAACAAAGGTGTT 62995 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 ||| ||||| | | |||||| |||||||| ||||||||| | || || || | | Sbjct 62996 AAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGATAAGTTAGGATTGACTCATCGT 63055 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 ||||||||||| || ||| ||||||| || ||||||||||| || ||| ||||| Sbjct 63056 CGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATAT 63115 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATT--AAGTCAAACTATAA 168765 | || |||||| | ||||| || |||||||| || || || ||| | | || | Sbjct 63116 AAAGATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAG--ATATCATTA 63173 Query 168766 ATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCAC 168825 | | ||| | | ||| || | ||||||||||| | || | | ||| || |||| Sbjct 63174 AGAAATTAAAGACCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAG 63233 Query 168826 AACTTGATAAAATGGTTCTTCCCCCTTGTCA-CACTTTAGTGCAATTTTATGTAA----- 168879 | |||||||||||| | | || || ||||| |||| || ||||| ||||| | Sbjct 63234 ATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTTTGT-CAATTCTATGTTAATTTC 63292 Query 168880 --GGAAAAAATCAATCTTAGATTGTCA-----GTTGTATCAAAGATCAGCTGATTTAGGA 168932 ||||| || | || ||| ||| |||||||| ||||| |||| | || Sbjct 63293 CCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTATCAGAGATCTTGTGATATGGGT 63352 Query 168933 TTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTG--TGCTAAGTAA 168988 || ||||| |||| || |||| | ||| | || ||||| | || |||| | Sbjct 63353 TTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTTAACTAAGATGATTGCT---CAT 63409 Query 168989 ATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 169048 |||| | || || ||| | |||||||||||| | || |||| ||||||||||| Sbjct 63410 GTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGGGTGATGCTCACGTGTATTT 63468 Query 169049 AAACCATGTTGAACCTTTAAAGGTTCAA-TTGAA 169081 | ||||| || |||| || | ||| ||||| Sbjct 63469 GGATCATGTGGATGCTTTGAAAGAACAACTTGAA 63502 >seq132 Length=62843 Score = 163 bits (180), Expect = 4e-35 Identities = 386/574 (67%), Gaps = 27/574 (5%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| || ||||| ||| | ||| |||| | | ||||||| Sbjct 30893 GAATTATTATGGTTTATTGCTGGATCAACCGATGCTAAAATTTTAACCAACAAAGGTGTT 30834 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 ||| ||||| | | |||||| |||||||| ||||||||| | || || || | | Sbjct 30833 AAAATTTGGGAAGGTAATGGATCTCGTGAGTTTTTAGATAAGTTAGGATTGACTCATCGT 30774 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 ||||||||||| || ||| ||||||| || ||||||||||| || ||| ||||| Sbjct 30773 CGTGAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATAT 30714 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATT--AAGTCAAACTATAA 168765 | || |||||| | ||||| || |||||||| || || || ||| | | || | Sbjct 30713 AAAGATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAG--ATATCATTA 30656 Query 168766 ATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCAC 168825 | | ||| | | ||| || | ||||||||||| | || | | ||| || |||| Sbjct 30655 AGAAATTAAAGACCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAG 30596 Query 168826 AACTTGATAAAATGGTTCTTCCCCCTTGTCA-CACTTTAGTGCAATTTTATGTAA----- 168879 | |||||||||||| | | || || ||||| |||| || ||||| ||||| | Sbjct 30595 ATTTTGATAAAATGGCTTTACCTCCATGTCATGTCTTTTGT-CAATTCTATGTTAATTTC 30537 Query 168880 --GGAAAAAATCAATCTTAGATTGTCA-----GTTGTATCAAAGATCAGCTGATTTAGGA 168932 ||||| || | || ||| ||| |||||||| ||||| |||| | || Sbjct 30536 CCAGAAAACGCTAAACCTAAATTATCATGTTTATTGTATCAGAGATCTTGTGATATGGGT 30477 Query 168933 TTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTG--TGCTAAGTAA 168988 || ||||| |||| || |||| | ||| | || ||||| | || |||| | Sbjct 30476 TTGGGAGTTCCTTTCAACATTGCTTCCTATGCTTTGTTAACTAAGATGATTGCT---CAT 30420 Query 168989 ATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTC 169048 |||| | || || ||| | |||||||||||| | || |||| ||||||||||| Sbjct 30419 GTGGT-TGATATGGATTGTGGTGAATTTATTCATACTATGGGTGATGCTCACGTGTATTT 30361 Query 169049 AAACCATGTTGAACCTTTAAAGGTTCAA-TTGAA 169081 | ||||| || |||| || | ||| ||||| Sbjct 30360 GGATCATGTGGATGCTTTGAAAGAACAACTTGAA 30327 >seq311 Length=49457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 309/466 (66%), Gaps = 34/466 (7%) Strand=Plus/Plus Query 162924 TTGATGGTCTTAAAGAATCTCAAAGAAAGGTTATTTATGCC---AT-AAGaaaaaaaTTT 162979 |||||||| | ||| | ||||||||| ||| | |||| || ||||||||| || Sbjct 36917 TTGATGGTTTGAAACCAGGTCAAAGAAAAGTTTTGTATGGTTGTATCAAGAAAAAA--TT 36974 Query 162980 AGATCAAAAGGGGATTTTATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACA 163039 | ||||| | | ||||||||||||||||| ||||||||| ||| | || Sbjct 36975 A----AAAAGTGAA----ATTAAGGTTGCTCAATTGGCTGGGTATGTAAGTGAAAACACT 37026 Query 163040 GACTATAAACACGGTGAACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTT 163099 | ||| | || ||||| ||| || | | || || ||| ||| || ||| | ||| Sbjct 37027 GGTTATCATCATGGTGAGCAATCATTGGTTCAGACCATCATTGGGTTGGCACAAAACTTT 37086 Query 163100 GTTGGTACAAATAATAT-AGCATTACTT-GAACCTGATGGTCAATTTGGTACCAGATTAG 163157 |||||| | |||||||| | ||| ||| |||| ||||| ||||||| ||| | Sbjct 37087 GTTGGTTCTAATAATATCAACAT--CTTAAAACCAAATGGTTCCTTTGGTAGTAGAGCCG 37144 Query 163158 AAGGAGGTAAAGATTCTGCGGCATCAAGATATATTTATACCAAACCAAAT-AAAATATTA 163216 || |||||||||| | || | |||||||||| || || ||| ||| || || Sbjct 37145 CTGGTGGTAAAGATTTCTCCGCTGCGAGATATATTTTCACAGAATTGAATGAAATTACTA 37204 Query 163217 AAATATATATTTAGAGAAGAAGATGACCCTATTTTA-AATTATACTGTTGAGGGTGAAC- 163274 || | ||||| | | ||||| || ||| || |||||| | || | ||||| Sbjct 37205 GAA-AGATATTCAATCCATTGGATGATCC-ATTGTATAATTATGTTCAAGATGATGAACA 37262 Query 163275 --CTGTTCA-------TTTTATC--CCAGTGATTCCATTAATTTTAATTAATGGTTCTAT 163323 ||||| | | |||| || || | ||| | |||||| | |||||| || Sbjct 37263 AACTGTTGAACCAGAGTGGTATCTTCCTGTTTTGCCAATGATTTTAGTCAATGGTGCTGA 37322 Query 163324 TGGTATTGGAACAGGATGGTCATGTTTTATCCCTCAATATAATCCT 163369 |||||||| || || |||||| | ||| ||| ||||||||| Sbjct 37323 AGGTATTGGTACTGGTTGGTCAACTAATATTCCTTCTTATAATCCT 37368 >seq241 Length=30804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 51875 TGATGATGTACTATTA--AATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTT 51932 ||||| ||| ||||| ||| | |||||||| | ||||||||||||||| || | Sbjct 9480 TGATGTTGT--TATTATGAATCGTCAACCAACTTTGCATAAAGCTTCTATGATGGGTCAT 9537 Query 51933 AAAGTTAAAATTCAACCAG-TAAAAACA-TTTAAAATGA-ATTTGGCTATGACTAAAGCA 51989 ||||| | | || ||||| | |||| | ||||| || | ||| |||| ||| || Sbjct 9538 AAAGTCAGAGTTTTACCAGGTGAAAAGACTTTAAGATTACATTATGCTAATACTGGTGCT 9597 Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||| ||||||||||| |||||||||||| | ||| | || ||| Sbjct 9598 TATAATGCCGATTTTGATGGTGATGAAATGAATATGCATTTCCCACAA 9645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635174686122760