Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq307 259 4e-64 seq250 259 4e-64 seq124 188 6e-43 seq166 183 2e-41 >seq307 Length=48190 Score = 259 bits (286), Expect = 4e-64 Identities = 584/866 (67%), Gaps = 35/866 (4%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||| |||||||||| || ||| | | || |||||||| | || || || | Sbjct 39126 TGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCT 39185 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC--ATTAAAACC 43824 |||| |||||||||||||| | |||||| || | |||||| | | ||| Sbjct 39186 GGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATG 39245 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| |||||| ||||| | ||| ||||| || ||||| ||||| || || || | Sbjct 39246 ACAATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTG 39305 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | |||||| ||| || ||| | ||||| ||| | |||||||| || | Sbjct 39306 TTGGTGAAAACTTGATTGAAAACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCAT 39365 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || ||||| || ||||| |||||||| |||||||| | | | || | Sbjct 39366 TCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTG 39425 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGCGATAGAAA-CAG 44060 | || || | ||||| ||| |||||| || ||||||||||| || |||| || Sbjct 39426 AAACTTATGTTAAAGACC--CACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACAT 39483 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 | | || |||| | ||||| || |||||| | |||||||| | || ||| ||| Sbjct 39484 TCCATGT-ATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTT 39542 Query 44121 T---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | || ||| || | || || ||||| | | | ||||| |||||||| || || | Sbjct 39543 TATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCAT 39602 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| | || || ||||| || || ||||||||||||| || ||||| || || |||| Sbjct 39603 TTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATG 39662 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT--------ACT 44289 | || || || | |||||||| |||||| ||||||||||| ||||| ||| Sbjct 39663 AATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACT 39722 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGC 44349 || | | |||| || || || | | || | | ||| |||| || || Sbjct 39723 TGCAACAC----AGACCAT----CTCCA---GAAATTGTTGAAAAGATTATTGTTGAAGC 39771 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || | | ||| |||||| | | || || | || || |||| | || ||||| Sbjct 39772 TGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAA 39831 Query 44410 -TG-AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467 || || |||||| |||||| ||||||| |||| ||| | ||| | || | || Sbjct 39832 CTGTGAC--TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTG 39889 Query 44468 GGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTG 44527 ||| | | ||| || | ||| ||||| || ||||| |||||||||||||| ||| Sbjct 39890 GGTAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTG 39949 Query 44528 GAAGGCAAAACAAACTTTTTTGAAAA 44553 | || ||||| |||||||| ||||| Sbjct 39950 GCTGGTAAAACCAACTTTTTCGAAAA 39975 >seq250 Length=32566 Score = 259 bits (286), Expect = 4e-64 Identities = 584/866 (67%), Gaps = 35/866 (4%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||||||| |||||||||| || ||| | | || |||||||| | || || || | Sbjct 28612 TGTTTCCAATTAAATATCATGAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCT 28671 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC--ATTAAAACC 43824 |||| |||||||||||||| | |||||| || | |||||| | | ||| Sbjct 28672 GGACTTGTGAAGAAGTTGATTTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATG 28731 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| |||||| ||||| | ||| ||||| || ||||| ||||| || || || | Sbjct 28732 ACAATGAAAAATATTTTGTTTCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTG 28791 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | |||||| ||| || ||| | ||||| ||| | |||||||| || | Sbjct 28792 TTGGTGAAAACTTGATTGAAAACTTTTCTGCTGAAGTCCAACTGCCAGAAGCTAAATCAT 28851 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || ||||| || ||||| |||||||| |||||||| | | | || | Sbjct 28852 TCTATGGTTTCCAAATCATGATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTG 28911 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGCGATAGAAA-CAG 44060 | || || | ||||| ||| |||||| || ||||||||||| || |||| || Sbjct 28912 AAACTTATGTTAAAGACC--CACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACAT 28969 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTT 44120 | | || |||| | ||||| || |||||| | |||||||| | || ||| ||| Sbjct 28970 TCCATGT-ATTACCAAGAAAGCTGAATGGGCCATCAAATGGATTCAAGATAAAGATGCTT 29028 Query 44121 T---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | || ||| || | || || ||||| | | | ||||| |||||||| || || | Sbjct 29029 TATATGCTGAAAGATTGGTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCAT 29088 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| | || || ||||| || || ||||||||||||| || ||||| || || |||| Sbjct 29089 TTGCTTCTATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATG 29148 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT--------ACT 44289 | || || || | |||||||| |||||| ||||||||||| ||||| ||| Sbjct 29149 AATTGATCTGTAGAGATGAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCACT 29208 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGC 44349 || | | |||| || || || | | || | | ||| |||| || || Sbjct 29209 TGCAACAC----AGACCAT----CTCCA---GAAATTGTTGAAAAGATTATTGTTGAAGC 29257 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || | | ||| |||||| | | || || | || || |||| | || ||||| Sbjct 29258 TGTTGATGTTGAAAAAGAATATTTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAA 29317 Query 44410 -TG-AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467 || || |||||| |||||| ||||||| |||| ||| | ||| | || | || Sbjct 29318 CTGTGAC--TTGATGTGTCAATATGTTGAATATGTTGCTGATAGATTATTATTTGCCTTG 29375 Query 44468 GGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTG 44527 ||| | | ||| || | ||| ||||| || ||||| |||||||||||||| ||| Sbjct 29376 GGTAACAAGAAAGTTTACAATGTTACTAACCCATTCGATTTCATGGAAAATATTTCCTTG 29435 Query 44528 GAAGGCAAAACAAACTTTTTTGAAAA 44553 | || ||||| |||||||| ||||| Sbjct 29436 GCTGGTAAAACCAACTTTTTCGAAAA 29461 >seq124 Length=102737 Score = 188 bits (208), Expect = 6e-43 Identities = 420/617 (68%), Gaps = 15/617 (2%) Strand=Plus/Minus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 ||||||||||| |||||| ||| || ||| | ||||| ||| | || |||||| Sbjct 21959 GTGTTTCCAATAAAATATCCTGAAATTTGGACTTTCTACAAGAAATCTGTTGCATCATTT 21900 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG---ATTGCATTAAAA 43822 ||||||||||||||| |||| |||| |||||| || | ||||| | | | | || Sbjct 21899 TGGACAGCAGAAGAAATTGACTTGAGTAAAGATTTTGATGATTGGGAAAATAAAATGAAT 21840 Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | |||| | ||| || || ||||| || ||||||||||| || || ||| Sbjct 21839 AAAGATGAAAGATTTTTCATCTCAAGAGTTTTAGCCTTTTTTGCTGCATCAGATGGTATA 21780 Query 43883 GTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC-ACGAT 43940 ||||||||||| |||||| | |||| | |||||| || | || ||||| | | | Sbjct 21779 GTCAATGAAAACTTGGTTGAAAACTTTTGTACT-GAAGTTAAACTTCCTGAAGCCAAGCT 21721 Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000 | ||| | || || || || |||||||| ||||| |||| || ||| | | Sbjct 21720 GGTTT-ACAAATTCCAGATCATGATGGAAAATATCCATTCAGAAACATATTCCCTTTTAA 21662 Query 44001 TAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AACA 44059 | || || ||| |||| ||| | ||| || ||||| || || || || || | Sbjct 21661 TTGAAACCTACTTCAAGGATCCTAAGGAGGCCGATTTCTTGTTCAACGCCATTGACAATA 21602 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AATTCAAATGATTC 44118 || | | ||| | |||||||| ||||| ||| |||||| || | || | | Sbjct 21601 TTAAATAC-ATTGGTGAAAAAGCAGATTGGGCTATTAGATGGATTCAAGACGAAGAAGCC 21543 Query 44119 TT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || ||| |||| || | || || ||||| | | | |||||||||||||| || || Sbjct 21542 TTGTTTGCAGAAAGATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCA 21483 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 || || |||| |||||||| || ||| |||| |||||||| || || || || |||||| Sbjct 21482 TTCGCTTCCATTTTTTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAAT 21423 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATAT 44296 || || || || | || ||||| | || ||||| |||||| || || || ||| Sbjct 21422 GAATTGATCTGTAGGGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA- 21364 Query 44297 CTAGGAGACGATAAGCC 44313 || ||||| ||||||| Sbjct 21363 CTTGGAGA--ATAAGCC 21349 >seq166 Length=47476 Score = 183 bits (202), Expect = 2e-41 Identities = 326/473 (69%), Gaps = 21/473 (4%) Strand=Plus/Plus Query 19322 AACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAA 19381 || |||||| | ||||||| | || | || | ||||| || |||||| ||| | Sbjct 44995 AAAAATTGGATTATAAACATTGTAAAGGGTTGTTATTGTATGGTCCTCCGGGTACTGGTA 45054 Query 19382 AAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA---AAACAACCTCCCAAAATTG 19438 |||| |||||||| ||| || | |||| | | | ||| ||||| ||||||| Sbjct 45055 AAACTTTAATTGCCAGAAAATTATCTAAAATGTTGAATGGTAAAGAACCT---AAAATTG 45111 Query 19439 TAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTT 19498 | |||||||| ||||| || | ||||||||| ||| || ||||||||| | || || Sbjct 45112 TTAATGGTCCAGAAATGTTGAGTAAATATGTTGGTGCTTCTGAAGAAAATATTCGTAATT 45171 Query 19499 TGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TTGCACA 19555 | || || || |||| |||| | ||| | | || | | | |||| || || Sbjct 45172 TATTCAAAGATGCCGAAGCAGAATATAAAT-TAAAAGGTGAAGA--TTCTGATTTACATG 45228 Query 19556 TTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT---------G 19606 |||| || | ||||||||||| | | | || |||||||| || ||| | Sbjct 45229 TTATTATTTTTGATGAATTGGATTCTGTTTTCAAACAAAGAGGGTCAGGTAAATCTGATG 45288 Query 19607 TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACC 19666 || ||| || ||| | ||||||||||||| | | || ||| | || |||||| | | Sbjct 45289 GAACTGGTGTTGGTGATAATGTTGTCAATCAATTATTATCCAAAATGGATGGTGTTGATC 45348 Query 19667 AACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCT 19726 || |||||||||||||||||||||| ||||| ||| | |||| ||||| || | || | Sbjct 45349 AATTGAATAATATTTTAGTTATTGGTATGACCAATCGTTTGGATTTAATTGATACTGCAT 45408 Query 19727 TATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 | ||| |||| ||| | || ||||| | ||||||||| ||||| |||||| Sbjct 45409 TGTTAAGACCAGGTAGATTTGAAATTCAAATCGAAATTTCTTTACCTGATGAA 45461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454222253835