Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq325 230 3e-55 seq51 230 3e-55 seq1 98.7 1e-15 >seq325 Length=13538 Score = 230 bits (254), Expect = 3e-55 Identities = 855/1321 (65%), Gaps = 37/1321 (3%) Strand=Plus/Minus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| || ||||| || | |||||| ||| ||||| | ||||| ||| Sbjct 12264 TTGACAATTTGGAATTCACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAAGGT 12205 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || || |||||||| |||||||||||||||| || || || ||||||||||| || | | Sbjct 12204 TCGAAACATTCATTGTTACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCAACC 12145 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846 || | ||| | | ||| | | || || || | | |||||| || | Sbjct 12144 AACAAGGAGTTTCTCAAACCATGTTTGGCCATCTTTTGTTTCAAAGTATCCCAATCCCAT 12085 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | || || ||||||| |||| ||| |||||| || | | ||||| || || |||| Sbjct 12084 AATTCAG-TTGGTTTTCTGTTCC-ACAAGTCAAATTGTAATAAACCTTGAGAAGCTGGAG 12027 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 110966 |||| | |||||||| ||||| | |||| |||||| | || | | Sbjct 12026 AACCTGGGTAACTTTCATAGACACCTTCTTCAGCAGCTAATTCAATAGAAGATTCAACAG 11967 Query 110967 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAA 111026 || || || |||||||||||||| || || | || | ||||| | ||||||| Sbjct 11966 CAGCATGGTAAATGGTTTCAAAGATTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAA 11907 Query 111027 ATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 111086 ||| | | | | ||||| |||| || | |||||||||||||||| |||| |||| Sbjct 11906 ATGGCAATCTCAAAGACATAAAAGCATCAGCTAAACCTTGAACACCCAAAGCAATTGGTC 11847 Query 111087 TGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGAC 111144 |||||| ||||||||| ||||| || ||| ||| || || | || | || || || Sbjct 11846 TGTGTCTCATATTAGATCTTTC-AGC-TTCTGGAACTGGGTAGTAGTTACGATCGATAAC 11789 Query 111145 TCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA---TAATCAAA 111201 || ||| | || || |||| || || | |||||| | ||||||| | || | Sbjct 11788 TCTGTTCAAGTTACGAGTGACAACTTTAGTAACTTCATGCAATTTTTCAAAGTTATACCA 11729 Query 111202 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 ||| | | ||||| | ||| | ||| | || || || ||||| || || Sbjct 11728 AGT---ATTGCTTTCATCGTGTTCAACAAAAGATGGCAATGCAATGGAAGCCAAGTTACA 11672 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 |||||| ||||| | | | || || | |||||| ||| ||||||||| || Sbjct 11671 AACAGCAACTTCATCTGGAGCAGAATATTCAACAATTTCACAACACAAGTTGGAAGATTT 11612 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || |||||||||||||||||| |||| |||| || ||||| || || | ||| | Sbjct 11611 GATGACACCCAAATTCTTTTGGTTAGTCTTGGTGTTACAAGCATCTTTATACAACATAAA 11552 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGT 111433 || || || || || || || | | | ||||| | ||| | | ||| || | Sbjct 11551 TGGAGTACCAGTTTCGGTTTGGGCACTCAAGATAGCGTACCATAATTTTTGGGCTTTGAT 11492 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 || | | | || |||| ||||| | || || | ||||||| || ||| Sbjct 11491 GGTTTGTC--TACCACGGTTCTCCTTTTCGTATCTGGTATATAATTCTTCAAATTCATCA 11434 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || | || || | |||||| || | | |||| |||| | || ||| | ||| | Sbjct 11433 CCGTAGACATCTGACAAACCTGGAGCTTCATTTGGAGAGAACAAAGTCCAGTCACCGTTT 11374 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACA 111612 | ||||| | ||||||||| | ||||| ||||||| | || || | ||||| | Sbjct 11373 TGTTCAACTCTCTTCATGAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTGGCT 11314 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 | || ||||| | ||| ||||| || | || | || || | |||||| ||| Sbjct 11313 CTGA-TTTCTTCTTTACCGTGGTTCTTTCTAATATCGATAAAGTCAAAGATATCACTGTG 11255 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACAT 111728 |||||| || | || | || | || || || | | ||| |||||| |||| Sbjct 11254 CCATGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTG-TTACCACCTTGATCAACAT 11196 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | || || ||| ||| || || | | ||| ||||||||||| | || |||||| | Sbjct 11195 AACGAGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAG 11136 Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 111848 | || ||| || | ||| | | | |||||||||| |||||||| |||| Sbjct 11135 TACCAGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAG 11076 Query 111849 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 111908 | | ||| || ||| ||||| | | ||| | || ||||| | || || || | Sbjct 11075 CACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCAT 11016 Query 111909 CCTTGTTGGCGATAAGGAAGCAAC-TG--GACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 |||| | || ||| ||| ||| || ||||| || |||||||| ||||| ||||||| Sbjct 11015 CCTTCATAGC---AAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGA 10959 Query 111966 A 111966 | Sbjct 10958 A 10958 >seq51 Length=22326 Score = 230 bits (254), Expect = 3e-55 Identities = 855/1321 (65%), Gaps = 37/1321 (3%) Strand=Plus/Minus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| || ||||| || | |||||| ||| ||||| | ||||| ||| Sbjct 20533 TTGACAATTTGGAATTCACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAAGGT 20474 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 || || |||||||| |||||||||||||||| || || || ||||||||||| || | | Sbjct 20473 TCGAAACATTCATTGTTACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCAACC 20414 Query 110789 AAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG--T 110846 || | ||| | | ||| | | || || || | | |||||| || | Sbjct 20413 AACAAGGAGTTTCTCAAACCATGTTTGGCCATCTTTTGTTTCAAAGTATCCCAATCCCAT 20354 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | || || ||||||| |||| ||| |||||| || | | ||||| || || |||| Sbjct 20353 AATTCAG-TTGGTTTTCTGTTCC-ACAAGTCAAATTGTAATAAACCTTGAGAAGCTGGAG 20296 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 110966 |||| | |||||||| ||||| | |||| |||||| | || | | Sbjct 20295 AACCTGGGTAACTTTCATAGACACCTTCTTCAGCAGCTAATTCAATAGAAGATTCAACAG 20236 Query 110967 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAA 111026 || || || |||||||||||||| || || | || | ||||| | ||||||| Sbjct 20235 CAGCATGGTAAATGGTTTCAAAGATTTGAATGTTTAATTCTCTAGCTTCTTGAGAATCAA 20176 Query 111027 ATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 111086 ||| | | | | ||||| |||| || | |||||||||||||||| |||| |||| Sbjct 20175 ATGGCAATCTCAAAGACATAAAAGCATCAGCTAAACCTTGAACACCCAAAGCAATTGGTC 20116 Query 111087 TGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGAC 111144 |||||| ||||||||| ||||| || ||| ||| || || | || | || || || Sbjct 20115 TGTGTCTCATATTAGATCTTTC-AGC-TTCTGGAACTGGGTAGTAGTTACGATCGATAAC 20058 Query 111145 TCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA---TAATCAAA 111201 || ||| | || || |||| || || | |||||| | ||||||| | || | Sbjct 20057 TCTGTTCAAGTTACGAGTGACAACTTTAGTAACTTCATGCAATTTTTCAAAGTTATACCA 19998 Query 111202 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 ||| | | ||||| | ||| | ||| | || || || ||||| || || Sbjct 19997 AGT---ATTGCTTTCATCGTGTTCAACAAAAGATGGCAATGCAATGGAAGCCAAGTTACA 19941 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 |||||| ||||| | | | || || | |||||| ||| ||||||||| || Sbjct 19940 AACAGCAACTTCATCTGGAGCAGAATATTCAACAATTTCACAACACAAGTTGGAAGATTT 19881 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || |||||||||||||||||| |||| |||| || ||||| || || | ||| | Sbjct 19880 GATGACACCCAAATTCTTTTGGTTAGTCTTGGTGTTACAAGCATCTTTATACAACATAAA 19821 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGT 111433 || || || || || || || | | | ||||| | ||| | | ||| || | Sbjct 19820 TGGAGTACCAGTTTCGGTTTGGGCACTCAAGATAGCGTACCATAATTTTTGGGCTTTGAT 19761 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 || | | | || |||| ||||| | || || | ||||||| || ||| Sbjct 19760 GGTTTGTC--TACCACGGTTCTCCTTTTCGTATCTGGTATATAATTCTTCAAATTCATCA 19703 Query 111494 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || | || || | |||||| || | | |||| |||| | || ||| | ||| | Sbjct 19702 CCGTAGACATCTGACAAACCTGGAGCTTCATTTGGAGAGAACAAAGTCCAGTCACCGTTT 19643 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACA 111612 | ||||| | ||||||||| | ||||| ||||||| | || || | ||||| | Sbjct 19642 TGTTCAACTCTCTTCATGAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTGGCT 19583 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 | || ||||| | ||| ||||| || | || | || || | |||||| ||| Sbjct 19582 CTGA-TTTCTTCTTTACCGTGGTTCTTTCTAATATCGATAAAGTCAAAGATATCACTGTG 19524 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACAT 111728 |||||| || | || | || | || || || | | ||| |||||| |||| Sbjct 19523 CCATGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTG-TTACCACCTTGATCAACAT 19465 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | || || ||| ||| || || | | ||| ||||||||||| | || |||||| | Sbjct 19464 AACGAGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAG 19405 Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 111848 | || ||| || | ||| | | | |||||||||| |||||||| |||| Sbjct 19404 TACCAGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAG 19345 Query 111849 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 111908 | | ||| || ||| ||||| | | ||| | || ||||| | || || || | Sbjct 19344 CACTCTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCAT 19285 Query 111909 CCTTGTTGGCGATAAGGAAGCAAC-TG--GACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 |||| | || ||| ||| ||| || ||||| || |||||||| ||||| ||||||| Sbjct 19284 CCTTCATAGC---AAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGA 19228 Query 111966 A 111966 | Sbjct 19227 A 19227 >seq1 Length=76776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 |||||| | ||||| ||||| || || | ||||| || ||||||||| |||||| Sbjct 32935 TATGGTAGAGTTGCTCCACGTTCTGGATTAGCTGTTAAACATGGTATTTCTACTGGTGCT 32994 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 |||||||||||| | || ||| |||||||| ||||| ||| | || ||||| | || Sbjct 32995 GGTGTTATTGATGCTGATTATCGTGGTGAAGTTAAAGTTGTTTTATTTAATCATAGTGAA 33054 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 164762 ||||| ||||| | || |||| ||| | || || ||| Sbjct 33055 AAAGATTTTGAAATTAAACAAGGTGATAGAATTGCTCAA 33093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029118903200