Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq106 143 6e-29 seq297 140 8e-28 seq183 86.0 1e-11 >seq106 Length=24021 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||| ||||||| ||||| || | ||||||||| || Sbjct 4156 TCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 4215 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || |||||| || || ||||||||||| || Sbjct 4216 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 4275 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || || ||| || |||||||| |||| ||| || || || || || Sbjct 4276 GTCTTGGATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAAT 4335 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || || | ||| | |||||| || Sbjct 4336 AGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 4374 >seq297 Length=71103 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||| ||||||||||| | ||||| || | ||| ||||| || Sbjct 34784 TCTCAAGACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 34725 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || |||||||| || | || |||||| || || ||||||||||| || Sbjct 34724 GTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 34665 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| || || || || |||||||| || | ||| || || || ||||| Sbjct 34664 ATCTTGGATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCAACTTCCAAAGTGAT 34605 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||| || | ||| | ||||||| Sbjct 34604 AGTTTTACCAGTTAAAGTCTTGACGAAAATTTGCATT 34568 >seq183 Length=77314 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || ||||||||||| |||||||| Sbjct 36163 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCAGAGACATCACC 36222 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | || || || || || | || ||| |||| Sbjct 36223 ACCTTGGGTTTCAATGACTGGCAAAGCGGTCAAAGAACCAGCACC 36267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525592494698