Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05-
08] 367 sequences; 13,991,476 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq297 158 3e-33
seq106 140 7e-28
seq196 89.7 1e-12
seq75 89.7 1e-12
>seq297
Length=71103
Score = 158 bits (174), Expect = 3e-33
Identities = 157/201 (78%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966
||||||||| ||||||||||||| |||| || | || || |||| |||||| || || |
Sbjct 34760 TTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCTAATTGTTTACCAGCGA 34702
Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026
| ||||| | |||||| || |||||||| || || |||||||| || | ||| |||
Sbjct 34701 AAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGT 34642
Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086
|||| || ||||| |||| ||| ||||| | |||||| || ||||| || |||||||| |
Sbjct 34641 TATCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTTTTACCAGTTAAAGTCTTGA 34582
Query 283087 CGAATATCTGCATTTTCATAT 283107
|||| || |||||| | ||||
Sbjct 34581 CGAAAATTTGCATTGTGATAT 34561
>seq106
Length=24021
Score = 140 bits (154), Expect = 7e-28
Identities = 148/195 (76%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| ||||||||||||||||||| | || | ||||| || | |||||| || |||||
Sbjct 4180 TTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 4239
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
|||||| | |||||| || |||||||| || ||||||||||| || | ||| || |
Sbjct 4240 GATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATT 4299
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|| || ||||| || | ||||||||| | || || || ||||| || || ||||| ||
Sbjct 4300 GTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGAC 4359
Query 283088 GAATATCTGCATTTT 283102
||| || ||||| ||
Sbjct 4360 GAAAATTTGCATCTT 4374
>seq196
Length=43764
Score = 89.7 bits (98), Expect = 1e-12
Identities = 122/169 (72%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085
|| ||||| ||||| | |||||||| |||| || ||||||| || || || || |||
Sbjct 18747 GTTGGGAAACCTTCAACTTGACCGTTAGCAATAGCTCTCATCAAGGTAGATTTACCGGCA 18688
Query 317086 CCATTGGGGCCGCAAAGACCATACCGA---TTTCCCTTCTTCAGATTAAAACGGGTGTTG 317142
||||| || || || | ||| || | |||| |||||| | || |||| |||
Sbjct 18687 CCATTTGGACCACACAAACCGTATCTTCTGTTTC---TCTTCAATCTGAATTGGGTCTTG 18631
Query 317143 TTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACA 317191
|||| | |||||| ||||||| |||| ||||||||||| | |||||
Sbjct 18630 TTCAACAAGATCTTAGCACCATAAGCCAAGGAGAACTCACAGTTACACA 18582
>seq75
Length=23600
Score = 89.7 bits (98), Expect = 1e-12
Identities = 122/169 (72%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085
|| ||||| ||||| | |||||||| |||| || ||||||| || || || || |||
Sbjct 19153 GTTGGGAAACCTTCAACTTGACCGTTAGCAATAGCTCTCATCAAGGTAGATTTACCGGCA 19094
Query 317086 CCATTGGGGCCGCAAAGACCATACCGA---TTTCCCTTCTTCAGATTAAAACGGGTGTTG 317142
||||| || || || | ||| || | |||| |||||| | || |||| |||
Sbjct 19093 CCATTTGGACCACACAAACCGTATCTTCTGTTTC---TCTTCAATCTGAATTGGGTCTTG 19037
Query 317143 TTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACA 317191
|||| | |||||| ||||||| |||| ||||||||||| | |||||
Sbjct 19036 TTCAACAAGATCTTAGCACCATAAGCCAAGGAGAACTCACAGTTACACA 18988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734278036018
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |