Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sp._20LDI48194_20[genbank_20GCA_5F001005365.1_202015-05- 08] 367 sequences; 13,991,476 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq297 158 3e-33 seq106 140 7e-28 seq196 89.7 1e-12 seq75 89.7 1e-12 >seq297 Length=71103 Score = 158 bits (174), Expect = 3e-33 Identities = 157/201 (78%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||||||||| ||||||||||||| |||| || | || || |||| |||||| || || | Sbjct 34760 TTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCTAATTGTTTACCAGCGA 34702 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | ||||| | |||||| || |||||||| || || |||||||| || | ||| ||| Sbjct 34701 AAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATTTTGGATTTGACGT 34642 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 |||| || ||||| |||| ||| ||||| | |||||| || ||||| || |||||||| | Sbjct 34641 TATCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATAGTTTTACCAGTTAAAGTCTTGA 34582 Query 283087 CGAATATCTGCATTTTCATAT 283107 |||| || |||||| | |||| Sbjct 34581 CGAAAATTTGCATTGTGATAT 34561 >seq106 Length=24021 Score = 140 bits (154), Expect = 7e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| | || | ||||| || | |||||| || ||||| Sbjct 4180 TTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 4239 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||| || |||||||| || ||||||||||| || | ||| || | Sbjct 4240 GATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGATTTGACATT 4299 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | ||||||||| | || || || ||||| || || ||||| || Sbjct 4300 GTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGAC 4359 Query 283088 GAATATCTGCATTTT 283102 ||| || ||||| || Sbjct 4360 GAAAATTTGCATCTT 4374 >seq196 Length=43764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085 || ||||| ||||| | |||||||| |||| || ||||||| || || || || ||| Sbjct 18747 GTTGGGAAACCTTCAACTTGACCGTTAGCAATAGCTCTCATCAAGGTAGATTTACCGGCA 18688 Query 317086 CCATTGGGGCCGCAAAGACCATACCGA---TTTCCCTTCTTCAGATTAAAACGGGTGTTG 317142 ||||| || || || | ||| || | |||| |||||| | || |||| ||| Sbjct 18687 CCATTTGGACCACACAAACCGTATCTTCTGTTTC---TCTTCAATCTGAATTGGGTCTTG 18631 Query 317143 TTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACA 317191 |||| | |||||| ||||||| |||| ||||||||||| | ||||| Sbjct 18630 TTCAACAAGATCTTAGCACCATAAGCCAAGGAGAACTCACAGTTACACA 18582 >seq75 Length=23600 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 317026 GTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA 317085 || ||||| ||||| | |||||||| |||| || ||||||| || || || || ||| Sbjct 19153 GTTGGGAAACCTTCAACTTGACCGTTAGCAATAGCTCTCATCAAGGTAGATTTACCGGCA 19094 Query 317086 CCATTGGGGCCGCAAAGACCATACCGA---TTTCCCTTCTTCAGATTAAAACGGGTGTTG 317142 ||||| || || || | ||| || | |||| |||||| | || |||| ||| Sbjct 19093 CCATTTGGACCACACAAACCGTATCTTCTGTTTC---TCTTCAATCTGAATTGGGTCTTG 19037 Query 317143 TTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACA 317191 |||| | |||||| ||||||| |||| ||||||||||| | ||||| Sbjct 19036 TTCAACAAGATCTTAGCACCATAAGCCAAGGAGAACTCACAGTTACACA 18988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734278036018