Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 262 4e-65 >seq1 Length=2377843 Score = 262 bits (290), Expect = 4e-65 Identities = 601/896 (67%), Gaps = 19/896 (2%) Strand=Plus/Plus Query 15892 TTTAGAAGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTT 15951 |||||| |||||| | ||||||||||| ||| | |||||||| ||||| ||||| Sbjct 1803906 TTTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTT 1803965 Query 15952 TCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAA-TATCTT 16008 || | || || ||||||||||| ||||| || || |||||| | || ||| | |||| Sbjct 1803966 ACCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTAACATTGTAAACTTTCTT 1804025 Query 16009 AGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAA 16068 ||||| || ||| ||||||||| || ||| |||| | |||||||||||| || Sbjct 1804026 GT--TACCCAAGGCAAATAA-TAATCTATCAGCAACATATTCAACATATTGACACATCAA 1804082 Query 16069 GTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTAT 16128 ||| || || || || | | || |||||||| | || ||| ||| || ||| | Sbjct 1804083 GTCACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAAC 1804142 Query 16129 CACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC---AGACGGTGTATGGTTTAG 16185 |||| ||||| ||| || | | | |||| ||| ||| | || | | Sbjct 1804143 ATCAACAGCTTCAACAATAATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAA 1804199 Query 16186 GTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTC 16245 ||| |||| | ||| || || || ||||| ||||| ||||| | ||| | ||| Sbjct 1804200 GTGGGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTC 1804259 Query 16246 GTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 ||||| ||||| || |||||||| |||| || || |||||||| || | |||||| Sbjct 1804260 ATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAA 1804319 Query 16306 TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT 16365 ||| || ||||| ||||| |||| || |||||||| | |||| ||| || || Sbjct 1804320 TGAACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAA 1804379 Query 16366 AGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCAT 16425 ||||||||||| |||||||||| ||||||| ||||| | | ||||| || Sbjct 1804380 AGCATCTTTATCTTGAATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAAT 1804439 Query 16426 CGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 |||| ||||| |||||||| || ||| || || | | ||| || ||||| Sbjct 1804440 GTTTTCAATGGCATTAAACAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAAT 1804499 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 | |||| |||||||| || || ||||| || || || || || |||||||| | Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 | ||| || | | ||| ||||| | |||| ||| || ||| ||| || || Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC---GTCAGA 16662 ||| ||| ||||| ||||| || || | || |||||| |||| ||| | Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTC--A 1804677 Query 16663 TGTAA--GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAA 16720 | ||| | | |||||| | |||||||| || ||| |||||||| ||||| Sbjct 1804678 TTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAG 1804737 Query 16721 AAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||| || | || |||||||| | ||||| || |||| |||| || ||||| Sbjct 1804738 AAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793 Score = 122 bits (134), Expect = 9e-23 Identities = 341/514 (66%), Gaps = 12/514 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 ||||| ||||||||||||| || | ||||| ||||| || ||||| || | || Sbjct 1025735 ACACCAGCTCTTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAG 1025676 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGT-AGCTGAAAATATCTTA-GAGTACCCCA 16019 |||||||||||||| |||||||| |||||||| | | | |||| |||| | |||| | Sbjct 1025675 GATATATTTTCCATGAAATCAAATGGATTAGTCACGTTATAATA-CTTATCATTACCAAA 1025617 Query 16020 GTTCCGTAACTAATCTATCTGCTACAA-ATTCTATATATTGACACATTAAGTCGCAATTA 16078 ||| |||||||| || |||| |||| | |||||||||||| || || ||||| Sbjct 1025616 AGCAACCAAC-AATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTC 1025559 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || | | || ||||| || | | || | | | ||| || ||| ||| Sbjct 1025558 ATACCCAACAAAGAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCT 1025499 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAG---ACGGTGTATGGTTTAGGTGTTTAAAC 16195 || | ||||| | || | || ||| ||| | | || | ||| Sbjct 1025498 TC---AGTGATAATCTTTTCTATAATGGAAGGATCCGGCTTATTCTCCAAGTATGAAAAT 1025442 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || ||| || | ||| || | |||||||| || | ||| | ||| || || ||| Sbjct 1025441 AGTAAACAAGCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAA 1025382 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 ||||| |||||||| |||| ||| || |||||||| || | ||| |||||||| Sbjct 1025381 GTTAAACCTGGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTG 1025322 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 ||||| || || |||| || ||||| || | |||| ||| || || || |||| Sbjct 1025321 AAGAAAATGCCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCG 1025262 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 | |||||||| | |||| || ||||||| Sbjct 1025261 TCTTGAATCCATCTAATAGCCCAATCTGCTTTTT 1025228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413441098000