Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq16 134 1e-26 seq5 104 2e-17 >seq16 Length=329187 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| ||| |||| || || || || ||||| |||||| ||| ||| Sbjct 297268 TAAAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAAT 297327 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 || | || || | | | || |||| ||||| || ||||||||| | || || Sbjct 297328 CCTCCGACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAG 297387 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 ||||||||||| | |||||||| || ||||||||||||||| | |||| || | || | Sbjct 297388 ATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 297447 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| || |||||||||||||| | ||| |||| || |||| |||| || Sbjct 297448 ACAACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 297499 >seq5 Length=745199 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| || || || ||||| |||||| ||| ||| | | Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | |||| ||||| |||||||||||| | || ||||||| Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || |||||||| ||||| | ||| || | || ||||| Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||| | ||| |||| || |||| |||| || Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622550 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||||||| | || ||||| || |||||||| ||||| | |||| || | || Sbjct 622891 AGATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTGTCTGA 622832 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||||||||||||| | ||| |||| || |||| |||| || Sbjct 622831 CTACAACATTCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 622778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796049012100