Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 250 4e-61 seq5 152 8e-32 seq16 129 9e-25 >seq1 Length=2377843 Score = 250 bits (276), Expect = 4e-61 Identities = 449/651 (69%), Gaps = 14/651 (2%) Strand=Plus/Plus Query 205329 TAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATT 205388 |||||| |||||| | ||||| | ||||| | ||||| ||| || ||| | ||||| Sbjct 1090275 TAATTTAGGAAATTGTTTTGGAATTCGTTCAAGTTGTTCTTTCAAAGCATCCACATGATC 1090334 Query 205389 AACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAA 205448 | ||| | || |||| ||| ||| |||||||||||||| | | || | | Sbjct 1090335 CAAATACACGTGAGCATCACCCATAGTATGAATAAATTCACCACAATCCATATCAACCAC 1090394 Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | ||| || ||| ||| ||||| || || || || || ||||| Sbjct 1090395 ATGAGCAATCATCTTAGTTAACAAAGCATAGGAAGCAATGTTGAAAGGAACTCCCAAACC 1090454 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATG-TAAGATA--TTTATTATT--------A 205557 ||||||| ||||| ||||||| | ||||| ||| || |||| || | Sbjct 1090455 CATATCACAAGATCTCTGATACAATAAACATGATAATTTAGGTTTAGCGTTTTCTGGGAA 1090514 Query 205558 ATTA-CATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTA 205615 |||| ||| ||||| |||||| | |||||| || |||| | |||| || |||| |||| Sbjct 1090515 ATTAACATAGAATTG-ACAAAAGACATGACATGGAGGTAAAGCCATTTTATCAAAATCTG 1090573 Query 205616 TAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattta 205675 ||||||||||| | | ||||| ||||| | || || |||| ||| || | Sbjct 1090574 GTGGATTCCAGGCACTCATGATTATTCTTCTATCATATGGGTTGGACTTTAATTTCTTAA 1090633 Query 205676 tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATT 205735 | |||| | || |||||| | ||||| ||||||| | ||| ||| |||||| Sbjct 1090634 TGATATCTTGCAACTGATCATAACCTTGTCCAGTATAATCAGCATCACAATCTTTATATT 1090693 Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 ||||||||| || | |||||| |||||||||||||| || ||||||||||| | || Sbjct 1090694 CAGCACCAAAGTGTCTCCATTGGAAACCATAAACTGGTCCCAAATCACCTTCACGACGAT 1090753 Query 205796 CATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattc 205855 | | || || || | || | | | |||||||| | |||||||| | | | Sbjct 1090754 GAGTCAATCCTAACTTATCTAAAAACTCACGAGATCCATTACCTTCCCAAATTTTAACAC 1090813 Query 205856 ctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAA 205915 |||| || ||| ||| || | || |||||||||| ||||||||||||||||| | || Sbjct 1090814 CTTTGTTGGTTAAAATTTTAGCATCGGTTGATCCAGCAATAAACCATAATAATTCATGAA 1090873 Query 205916 CAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 || ||| | |||| | | || || || || |||||||||| ||||| Sbjct 1090874 TGATACCTTTAGAAAAGACTTTCTTGGTAGTTAACAATGGAAATGTATCAT 1090924 >seq5 Length=745199 Score = 152 bits (168), Expect = 8e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||| || |||||||| || |||| | ||| | | Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||||||||||||||| ||||| |||||| Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| || || |||| || || || || Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 |||||||||||||| |||||||| ||||| || | || |||||||| || || Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTTTTTAA 622543 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 124647 CCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTA 124706 ||||| ||||||||||| | |||||||| || ||||||||||| || || |||| || Sbjct 622896 CCACCAGATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTG 622837 Query 124707 GAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || |||||||| ||||| |||||||| ||||| || | || |||||||| Sbjct 622836 TCTGACTACAACATTCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 622777 Query 124767 ATTAAAAATT 124776 || ||| || Sbjct 622776 ATGCAAATTT 622767 >seq16 Length=329187 Score = 129 bits (142), Expect = 9e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || |||||||| || | || | ||| | Sbjct 297273 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCCTCC 297332 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| ||||||||||| ||||| |||||| Sbjct 297333 GACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 297392 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || |||||||| || ||| || |||| || || || || Sbjct 297393 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAAC 297452 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| || ||||| ||||| || | || |||||||| ||| || Sbjct 297453 ATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 297508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454583520000