Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1 250 4e-61
seq5 152 8e-32
seq16 129 9e-25
>seq1
Length=2377843
Score = 250 bits (276), Expect = 4e-61
Identities = 449/651 (69%), Gaps = 14/651 (2%)
Strand=Plus/Plus
Query 205329 TAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATT 205388
|||||| |||||| | ||||| | ||||| | ||||| ||| || ||| | |||||
Sbjct 1090275 TAATTTAGGAAATTGTTTTGGAATTCGTTCAAGTTGTTCTTTCAAAGCATCCACATGATC 1090334
Query 205389 AACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAA 205448
| ||| | || |||| ||| ||| |||||||||||||| | | || | |
Sbjct 1090335 CAAATACACGTGAGCATCACCCATAGTATGAATAAATTCACCACAATCCATATCAACCAC 1090394
Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508
||| |||||||| | ||| || ||| ||| ||||| || || || || || |||||
Sbjct 1090395 ATGAGCAATCATCTTAGTTAACAAAGCATAGGAAGCAATGTTGAAAGGAACTCCCAAACC 1090454
Query 205509 CATATCAGCTGATCTTTGATACATTTGACATG-TAAGATA--TTTATTATT--------A 205557
||||||| ||||| ||||||| | ||||| ||| || |||| || |
Sbjct 1090455 CATATCACAAGATCTCTGATACAATAAACATGATAATTTAGGTTTAGCGTTTTCTGGGAA 1090514
Query 205558 ATTA-CATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTA 205615
|||| ||| ||||| |||||| | |||||| || |||| | |||| || |||| ||||
Sbjct 1090515 ATTAACATAGAATTG-ACAAAAGACATGACATGGAGGTAAAGCCATTTTATCAAAATCTG 1090573
Query 205616 TAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattta 205675
||||||||||| | | ||||| ||||| | || || |||| ||| || |
Sbjct 1090574 GTGGATTCCAGGCACTCATGATTATTCTTCTATCATATGGGTTGGACTTTAATTTCTTAA 1090633
Query 205676 tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATT 205735
| |||| | || |||||| | ||||| ||||||| | ||| ||| ||||||
Sbjct 1090634 TGATATCTTGCAACTGATCATAACCTTGTCCAGTATAATCAGCATCACAATCTTTATATT 1090693
Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795
||||||||| || | |||||| |||||||||||||| || ||||||||||| | ||
Sbjct 1090694 CAGCACCAAAGTGTCTCCATTGGAAACCATAAACTGGTCCCAAATCACCTTCACGACGAT 1090753
Query 205796 CATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattc 205855
| | || || || | || | | | |||||||| | |||||||| | | |
Sbjct 1090754 GAGTCAATCCTAACTTATCTAAAAACTCACGAGATCCATTACCTTCCCAAATTTTAACAC 1090813
Query 205856 ctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAA 205915
|||| || ||| ||| || | || |||||||||| ||||||||||||||||| | ||
Sbjct 1090814 CTTTGTTGGTTAAAATTTTAGCATCGGTTGATCCAGCAATAAACCATAATAATTCATGAA 1090873
Query 205916 CAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966
|| ||| | |||| | | || || || || |||||||||| |||||
Sbjct 1090874 TGATACCTTTAGAAAAGACTTTCTTGGTAGTTAACAATGGAAATGTATCAT 1090924
>seq5
Length=745199
Score = 152 bits (168), Expect = 8e-32
Identities = 174/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || || |||| || |||||||| || |||| | ||| | |
Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | ||||| || || ||||||||||| || || |||| || || || ||
Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772
|||||||||||||| |||||||| ||||| || | || |||||||| || ||
Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGTTTTTAA 622543
Score = 100 bits (110), Expect = 4e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 124647 CCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTA 124706
||||| ||||||||||| | |||||||| || ||||||||||| || || |||| ||
Sbjct 622896 CCACCAGATCAACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGACGGTAGAACTTTG 622837
Query 124707 GAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| || || |||||||| ||||| |||||||| ||||| || | || ||||||||
Sbjct 622836 TCTGACTACAACATTCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 622777
Query 124767 ATTAAAAATT 124776
|| ||| ||
Sbjct 622776 ATGCAAATTT 622767
>seq16
Length=329187
Score = 129 bits (142), Expect = 9e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| |||| || |||||||| || | || | ||| |
Sbjct 297273 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCCTCC 297332
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||||| ||||| ||||||||||| ||||| ||||||
Sbjct 297333 GACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 297392
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | || ||||| || |||||||| || ||| || |||| || || || ||
Sbjct 297393 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAAC 297452
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||| || ||||| ||||| || | || |||||||| ||| ||
Sbjct 297453 ATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 297508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755454583520000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |