Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 316 2e-81 >seq1 Length=2377843 Score = 316 bits (350), Expect = 2e-81 Identities = 605/885 (68%), Gaps = 15/885 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || ||| |||||||||||| || || || ||||| || | || |||||||| Sbjct 1803924 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 1803983 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAA 16059 |||||| ||||| || || || | |||| | ||| ||| | | ||||| | || Sbjct 1803984 TTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTCTTGTTACCCAAGGCAAA 1804040 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||||||||||| || ||| |||| | ||| || ||| || ||||||||||| || | Sbjct 1804041 TAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAA 1804100 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| ||| || | || || || ||| | | |||||| | || ||| ||||||| || Sbjct 1804101 TAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAAT 1804160 Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236 || | || | ||| | | | | || || | ||||| |||| | ||| Sbjct 1804161 AATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGAGAACAACAAACA 1804217 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||||||| ||| || ||||| || |||| || || || || || || || | ||| Sbjct 1804218 AGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACC 1804277 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||| | |||| ||||| | ||| || |||| |||||||||||| ||||| || Sbjct 1804278 TGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAAT 1804337 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||||| |||||||||| ||| | || || |||| || || Sbjct 1804338 ACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTATCTTGAAT 1804397 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | ||||| | ||| ||| ||||| || || |||||||| Sbjct 1804398 CCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAAA 1804457 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 || ||| ||||| ||| || |||||| || |||| |||| ||||||||| Sbjct 1804458 CAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTTC 1804517 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 |||||||| || ||||| || || |||||||| || || ||||||| | | ||| Sbjct 1804518 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTTG 1804577 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||| | |||| |||| |||||||| ||| || ||||| ||| || || Sbjct 1804578 GACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 1804637 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAACCAGTC 16713 ||| || | | || ||||| | |||| || || | || | || ||| || Sbjct 1804638 AAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGTTCCAATC 1804697 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | |||||||| |||||| || ||||| |||||| || || || | || ||||| Sbjct 1804698 ATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTTTT 1804757 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818 ||| | ||||| || || | || ||| ||||||| |||||| Sbjct 1804758 ATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATA 1804802 Score = 210 bits (232), Expect = 2e-49 Identities = 557/835 (67%), Gaps = 23/835 (3%) Strand=Plus/Minus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| || ||| |||||||||||||||||||| ||||| || | || || ||||||| Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 |||| |||||||| ||||| | ||| || ||||| || || | | ||| | Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACA 1025606 Query 16065 ATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 ||||||| || |||| |||| | ||| || ||| |||||||| ||||| || | || Sbjct 1025605 ATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||| || | || || | || | || ||||| ||| |||| |||||| |||| || Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487 Query 16184 TCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTAAACATTATACAA 16237 | || ||| | || || ||| || ||| | |||| | ||| | || |||| Sbjct 1025486 T---TTTCTATA--ATGGAA-GGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||| |||| || | ||||||||||||| || || || ||||| || || | |||| Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| | |||| |||||| | ||| || || | || ||||| ||| ||||| || Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||||| || |||||||| ||||||| || | || | || || ||| Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAATC 1025253 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 ||| | ||||||||| |||||||| || | || || || || || || || || Sbjct 1025252 CATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAAC 1025193 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 || ||| || || ||| | || || || |||| | ||| ||||| Sbjct 1025192 AAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCT 1025133 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC-TAGCTTCGGATATTTG 16596 ||||| ||||| ||||| ||||| || | ||| || | | ||||| | | || Sbjct 1025132 GAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTT 1025074 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 ||||||| |||| |||| | |||||||| || ||||| ||||| || ||||| Sbjct 1025073 AACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAA 1025014 Query 16657 AAACGC---AAGT-ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT-TTTAACCAG 16711 ||| || || | || | | || ||| ||| || |||| | | | ||| ||| Sbjct 1025013 AAAGGCTAAAACTCTTGAGATGAA-AAATCTTTCATCTTTAT-TCATTTTATTTTCCCAA 1024956 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766 ||| ||||||||| || || | |||||| | |||||||| || ||||||| Sbjct 1024955 TCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAG 1024901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511132790000