Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1 316 2e-81
>seq1
Length=2377843
Score = 316 bits (350), Expect = 2e-81
Identities = 605/885 (68%), Gaps = 15/885 (2%)
Strand=Plus/Plus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
|||||| || ||| |||||||||||| || || || ||||| || | || ||||||||
Sbjct 1803924 TTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTACCAGCCAAGGAAATATT 1803983
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAA 16059
|||||| ||||| || || || | |||| | ||| ||| | | ||||| | ||
Sbjct 1803984 TTCCATGAAATCGAATGGGTTAGT--AACATT-GTAAACTTTCTTGTTACCCAAGGCAAA 1804040
Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119
||||||||||| || ||| |||| | ||| || ||| || ||||||||||| || |
Sbjct 1804041 TAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTCACAGTTCATACCCAA 1804100
Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179
||| ||| || | || || || ||| | | |||||| | || ||| ||||||| ||
Sbjct 1804101 TAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATCAACAGCTTCAACAAT 1804160
Query 16180 TATATCTCTTACTACACTATTTAACGGAGG---GTTTAATAAGTGTTTAAACATTATACA 16236
|| | || | ||| | | | | || || | ||||| |||| | |||
Sbjct 1804161 AATCT---TTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTGGGAGAACAACAAACA 1804217
Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296
|||||||||| ||| || ||||| || |||| || || || || || || || | |||
Sbjct 1804218 AGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATTGGAGAAAGTCAAACC 1804277
Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356
|||||| | |||| ||||| | ||| || |||| |||||||||||| ||||| ||
Sbjct 1804278 TGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGAACCACTGAAGAAAAT 1804337
Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416
|||||||| || ||||| |||||||||| ||| | || || |||| || ||
Sbjct 1804338 ACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTATCTTGAAT 1804397
Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476
|||||| | ||||| | ||||| | ||| ||| ||||| || || ||||||||
Sbjct 1804398 CCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGTTTTCAATGGCATTAAA 1804457
Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536
|| ||| ||||| ||| || |||||| || |||| |||| |||||||||
Sbjct 1804458 CAAGAAATCAGCTTCTTGTGGGTCTTTAACATAAGTTTCAATTAATAAAGAATACATTTC 1804517
Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596
|||||||| || ||||| || || |||||||| || || ||||||| | | |||
Sbjct 1804518 AGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGATTTAGCTTCTGGCAGTTG 1804577
Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656
||||| | |||| |||| |||||||| ||| || ||||| ||| || ||
Sbjct 1804578 GACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAATACCATCAGAAGCAGCGAA 1804637
Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGT--TTTAACCAGTC 16713
||| || | | || ||||| | |||| || || | || | || ||| ||
Sbjct 1804638 AAAGGCTAAAACTCTAGAAACAAAATATCTTTCATTGTCATTTAATTTGTTGTTCCAATC 1804697
Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773
| |||||||| |||||| || ||||| |||||| || || || | || |||||
Sbjct 1804698 ATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCAGAAGGAGGCTTCGGCTTTTTT 1804757
Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA 16818
||| | ||||| || || | || ||| ||||||| ||||||
Sbjct 1804758 ATAGAAATTCCAGATTTCATGATATTTAATTGGAAACATAACATA 1804802
Score = 210 bits (232), Expect = 2e-49
Identities = 557/835 (67%), Gaps = 23/835 (3%)
Strand=Plus/Minus
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|||| || ||| |||||||||||||||||||| ||||| || | || || |||||||
Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666
Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064
|||| |||||||| ||||| | ||| || ||||| || || | | ||| |
Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTTATCATTACCAAAAGCAACCAACA 1025606
Query 16065 ATCTATCCGCCACAA-ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123
||||||| || |||| |||| | ||| || ||| |||||||| ||||| || | ||
Sbjct 1025605 ATCTATCGGC-ACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547
Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183
||| || | || || | || | || ||||| ||| |||| |||||| |||| ||
Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487
Query 16184 TCTCTTACTACACTATTTAACGGAG--GGTTTAAT----AAGTGTTTAAACATTATACAA 16237
| || ||| | || || ||| || ||| | |||| | ||| | || ||||
Sbjct 1025486 T---TTTCTATA--ATGGAA-GGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433
Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297
||| |||| || | ||||||||||||| || || || ||||| || || | ||||
Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373
Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357
||||| | |||| |||||| | ||| || || | || ||||| ||| ||||| ||
Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313
Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417
||||||| || |||||||| ||||||| || | || | || || |||
Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGAATC 1025253
Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477
||| | ||||||||| |||||||| || | || || || || || || || ||
Sbjct 1025252 CATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAAC 1025193
Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537
|| ||| || || ||| | || || || |||| | ||| |||||
Sbjct 1025192 AAGAAATCGGCCTCCTTAGGATCCTTGAAGTAGGTTTCAATTAAAAGGGAATATGTTTCT 1025133
Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC-TAGCTTCGGATATTTG 16596
||||| ||||| ||||| ||||| || | ||| || | | ||||| | | ||
Sbjct 1025132 GAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAGTTT 1025074
Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656
||||||| |||| |||| | |||||||| || ||||| ||||| || |||||
Sbjct 1025073 AACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGCAAA 1025014
Query 16657 AAACGC---AAGT-ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT-TTTAACCAG 16711
||| || || | || | | || ||| ||| || |||| | | | ||| |||
Sbjct 1025013 AAAGGCTAAAACTCTTGAGATGAA-AAATCTTTCATCTTTAT-TCATTTTATTTTCCCAA 1024956
Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
||| ||||||||| || || | |||||| | |||||||| || |||||||
Sbjct 1024955 TCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAG 1024901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511132790000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |