Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 304 1e-77 >seq1 Length=2377843 Score = 304 bits (336), Expect = 1e-77 Identities = 614/897 (68%), Gaps = 23/897 (3%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 ||||| ||||| || |||||| || ||| |||||| ||||| || ||||| |||||| Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATC 14013 || ||| || ||||||||||| ||||| ||||| || || |||| | ||||| | Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 1804025 Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073 ||| | | |||| ||||||||| |||| | |||| ||||||| |||| || || Sbjct 1804026 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 1804085 Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133 ||| |||||||| | || || |||| || || ||| |||||||||| | | Sbjct 1804086 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 1804145 Query 14134 CACAGCCTCGTTTATAATAATCGT---AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190 ||||| || | ||||||| | || |||||| ||| || | || | || Sbjct 1804146 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 1804202 Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250 || | ||||| ||||||||| ||| | || |||||||||| || | ||| || Sbjct 1804203 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 1804262 Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310 || || || || ||||||||||| |||| ||||| ||||| || || | ||| ||||| Sbjct 1804263 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 1804322 Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || ||||| || || |||| |||||||| || | |||| ||| || | | || Sbjct 1804323 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 1804382 Query 14371 TTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14429 | ||| | | || |||||||| | |||||||||| ||| || ||||| | || Sbjct 1804383 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 1804441 Query 14430 TTTCAATAGCATTAAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487 ||||||| |||||||| || || ||||| | | | ||| || || || ||||| Sbjct 1804442 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 1804499 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 | ||| |||||||||||| || ||||||||||| || || |||||||| || | Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 | ||||||||| | ||| || || | |||| |||| ||| |||||| ||| || Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14665 ||||||| ||| || ||||| || || | | || ||| ||| || ||||||| Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT--CT-TTCATTGTC 1804676 Query 14666 -CTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721 | | | || |||||||| | ||||| ||| | ||| ||||| ||| ||||| Sbjct 1804677 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 1804736 Query 14722 AAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 || || | ||||||||||| | ||| ||||| | |||| || ||||| Sbjct 1804737 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793 Score = 239 bits (264), Expect = 4e-58 Identities = 590/882 (67%), Gaps = 25/882 (3%) Strand=Plus/Minus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||| || ||| ||||| ||||||||||| || |||||||| ||| |||||||||| Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666 Query 13974 CCATAAAATCAAATGGATTTGTTGACATA-AACACTTTATCACAACCTAGTTCTAATAGT 14032 |||| |||||||||||||| || || || |||| |||| ||| | | | | Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAAC 1025607 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 |||||||| ||| | || | ||||||| |||| ||||||||||||||||| | | Sbjct 1025606 AATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 || |||| || | || | | ||||| ||| ||||| || | ||||| Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487 Query 14153 ATCGTAATAATTTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACAC 14206 | ||||| |||||| | |||| | | || | ||||| |||||| Sbjct 1025486 TTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 ||| |||| |||| || || || |||| || | ||| ||||| || ||||| ||| Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 |||||||| |||| |||||| ||||| || || | ||||||||| || ||||| || Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATAT 14385 || |||| |||||||| || | |||| |||| ||||| | |||| || || | || || Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-AT 1025254 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||| | ||||||| || | ||||| ||| | | || | ||||| || || || Sbjct 1025253 CCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAA 1025194 Query 14446 TAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || || ||| |||| | |||||| ||| || ||||| | | | ||| || Sbjct 1025193 CAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGTT 1025136 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATC-TAGCTTCTGACCA 14562 || || || || |||||||| ||||| || | ||| || | | ||||| | Sbjct 1025135 TCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAG 1025077 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 || || || | |||| |||| |||| |||||||| ||||||||||| || || Sbjct 1025076 TTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGC 1025017 Query 14623 AAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCA 14679 |||||| || || | || || ||| | || | |||| ||| | |||| ||| Sbjct 1025016 AAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCA 1024957 Query 14680 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 ||| | ||||| ||| | || | ||| || |||||||||| ||||||| ||| Sbjct 1024956 ATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTT 1024897 Query 14740 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 || || | ||| ||||| |||| ||| ||||| || Sbjct 1024896 CTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 1024855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344695602000