Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1 304 1e-77
>seq1
Length=2377843
Score = 304 bits (336), Expect = 1e-77
Identities = 614/897 (68%), Gaps = 23/897 (3%)
Strand=Plus/Plus
Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954
||||| ||||| || |||||| || ||| |||||| ||||| || ||||| ||||||
Sbjct 1803907 TTAGACATAACACCAGCTTTTTGGTAATCAGAAACTCTCTTTTCGAAAAAGTTGGTTTTA 1803966
Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATC 14013
|| ||| || ||||||||||| ||||| ||||| || || |||| | ||||| |
Sbjct 1803967 CCAGCCAAGGAAATATTTTCCATGAAATCGAATGGGTTAGTA-ACATTGTAAACTTTCTT 1804025
Query 14014 ACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC 14073
||| | | |||| ||||||||| |||| | |||| ||||||| |||| || ||
Sbjct 1804026 GTTACCCAAGGCAAATAATAATCTATCAGCAACATATTCAACATATTGACACATCAAGTC 1804085
Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133
||| |||||||| | || || |||| || || ||| |||||||||| | |
Sbjct 1804086 ACAGTTCATACCCAATAAAGAAACTGGAAGAGCATCAGTGAAATATTCTTTTTCAACATC 1804145
Query 14134 CACAGCCTCGTTTATAATAATCGT---AATAATTTCATTAGAAGGAGGATATTTTAGATG 14190
||||| || | ||||||| | || |||||| ||| || | || | ||
Sbjct 1804146 AACAGCTTCA---ACAATAATCTTTTCAACAATTTCTGGAGATGGTCTGTGTTGCAAGTG 1804202
Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250
|| | ||||| ||||||||| ||| | || |||||||||| || | ||| ||
Sbjct 1804203 GGAGAACAACAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAGATCAATTCATT 1804262
Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310
|| || || || ||||||||||| |||| ||||| ||||| || || | ||| |||||
Sbjct 1804263 GGAGAAAGTCAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATAGAAGCAAATGA 1804322
Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370
|| ||||| || || |||| |||||||| || | |||| ||| || | | ||
Sbjct 1804323 ACCACTGAAGAAAATACCTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATATAAAGC 1804382
Query 14371 TTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14429
| ||| | | || |||||||| | |||||||||| ||| || ||||| | ||
Sbjct 1804383 ATCTTTATCTTGA-ATCCATTTGATGGCCCATTCAGCTTTCTTGGTAATACATGGAATGT 1804441
Query 14430 TTTCAATAGCATTAAATAAATGTTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14487
||||||| |||||||| || || ||||| | | | ||| || || || |||||
Sbjct 1804442 TTTCAATGGCATTAAACAAGAAATCAGCTTCT-TGTGGGTCTT-TAACATAAGTTTCAAT 1804499
Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547
| ||| |||||||||||| || ||||||||||| || || |||||||| || |
Sbjct 1804500 TAATAAAGAATACATTTCAGAATGAATGTTTTCCATCATGATTTGGAAACCATAGAATGA 1804559
Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607
| ||||||||| | ||| || || | |||| |||| ||| |||||| ||| ||
Sbjct 1804560 TTTAGCTTCTGGCAGTTGGACTTCGGCAGAAAAGTTTTCAATCAAGTTTTCACCAACAAT 1804619
Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG-- 14665
||||||| ||| || ||||| || || | | || ||| ||| || |||||||
Sbjct 1804620 ACCATCAGAAGCAGCGAAAAAGGCTAAAACTCTAGAAACAAAATAT--CT-TTCATTGTC 1804676
Query 14666 -CTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14721
| | | || |||||||| | ||||| ||| | ||| ||||| ||| |||||
Sbjct 1804677 ATTTAATTTGTTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCACAAGTCCA 1804736
Query 14722 AAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778
|| || | ||||||||||| | ||| ||||| | |||| || |||||
Sbjct 1804737 GAAGGAGGCTTCGGCTTTTTTATAGAAATTCCAGATTTCATGATATTTAATTGGAAA 1804793
Score = 239 bits (264), Expect = 4e-58
Identities = 590/882 (67%), Gaps = 25/882 (3%)
Strand=Plus/Minus
Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973
|||| || ||| ||||| ||||||||||| || |||||||| ||| ||||||||||
Sbjct 1025725 TTTGGTAATCAGACACTCTCTTTTCAAAGAAATTGGTTTTACCGGCCAAGGATATATTTT 1025666
Query 13974 CCATAAAATCAAATGGATTTGTTGACATA-AACACTTTATCACAACCTAGTTCTAATAGT 14032
|||| |||||||||||||| || || || |||| |||| ||| | | | |
Sbjct 1025665 CCATGAAATCAAATGGATTAGTCACGTTATAATACTT-ATCATTACCAAAAGCAACCAAC 1025607
Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092
|||||||| ||| | || | ||||||| |||| ||||||||||||||||| | |
Sbjct 1025606 AATCTATCGGCACAATATTCCACATATTGACACATCAAATCACAATTCATACCCAACAAA 1025547
Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152
|| |||| || | || | | ||||| ||| ||||| || | |||||
Sbjct 1025546 GAAACTGGAAGCGCATCACTGAAGTACTTCTTTTCAATACTAACAGCTTCAGTGATAATC 1025487
Query 14153 ATCGTAATAATTTCATTAGAAGGA----GGATATTTTAGATGTTTAAAAAT--TAAACAC 14206
| ||||| |||||| | |||| | | || | ||||| ||||||
Sbjct 1025486 TTTTCTATAATG------GAAGGATCCGGCTTATTCTCCAAGTATGAAAATAGTAAACAA 1025433
Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266
||| |||| |||| || || || |||| || | ||| ||||| || ||||| |||
Sbjct 1025432 GCATAATCGGTGTGAATACCTTCGTCCCTACAGATCAATTCATTTGAGAAAGTTAAACCT 1025373
Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326
|||||||| |||| |||||| ||||| || || | ||||||||| || ||||| ||
Sbjct 1025372 GGCATCAACCCTCTTTTTTTCAACCAGAAAATGGAAGCGAATGACCCACTGAAGAAAATG 1025313
Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATAT 14385
|| |||| |||||||| || | |||| |||| ||||| | |||| || || | || ||
Sbjct 1025312 CCTTCAATAGCAGCAAATGCCACCAATCTTTCTGCAAACAAGGCTTCTTCGTCTTGA-AT 1025254
Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445
|||| | ||||||| || | ||||| ||| | | || | ||||| || || ||
Sbjct 1025253 CCATCTAATAGCCCAATCTGCTTTTTCACCAATGTATTTAATATTGTCAATGGCGTTGAA 1025194
Query 14446 TAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503
|| || ||| |||| | |||||| ||| || ||||| | | | ||| ||
Sbjct 1025193 CAAGAAATCGGCCTCCTTAGGATCCTTGAA--GTAGGTTTCAATTAAAAGGGAATATGTT 1025136
Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATC-TAGCTTCTGACCA 14562
|| || || || |||||||| ||||| || | ||| || | | ||||| |
Sbjct 1025135 TCTGAATGGATATTTTCCATCATGATCTGGAATTTGT-AAACCAGCTTGGCTTCAGGAAG 1025077
Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622
|| || || | |||| |||| |||| |||||||| ||||||||||| || ||
Sbjct 1025076 TTTAACTTCAGTACAAAAGTTTTCAACCAAGTTTTCATTGACTATACCATCTGATGCAGC 1025017
Query 14623 AAAAAATGCCAATATGTTTTTAAT--AAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCA 14679
|||||| || || | || || ||| | || | |||| ||| | |||| |||
Sbjct 1025016 AAAAAAGGCTAAAACTCTTGAGATGAAAAATCTTTCATCTTTATTCATTTTATTTTCCCA 1024957
Query 14680 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739
||| | ||||| ||| | || | ||| || |||||||||| ||||||| |||
Sbjct 1024956 ATCATCAAAATCTTTACTCAAGTCAATTTCTTCTGCTGTCCAAAATGATGCAACAGATTT 1024897
Query 14740 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781
|| || | ||| ||||| |||| ||| ||||| ||
Sbjct 1024896 CTTGTAGAAAGTCCAAATTTCAGGATATTTTATTGGAAACAC 1024855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482344695602000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |