Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq16 109 4e-19
seq5 102 6e-17
>seq16
Length=329187
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || ||||| ||||| ||||||||||| | || ||| ||| |||||||
Sbjct 297481 ACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 297422
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|||||||| || ||| |||| | |||||||||||| || | ||||| || ||
Sbjct 297421 AATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 297362
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| ||||| | ||| ||||| || ||| ||| | ||| || ||||
Sbjct 297361 ATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAATAGTTTTA 297302
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331
|| || || || || || ||||||||||| |||||
Sbjct 297301 CCAGTTAAGGTCTTGACGAAAATTTGCATCTTTAA 297267
>seq5
Length=745199
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || ||||||||||||||||||||||| | || ||| ||| |||||
Sbjct 622568 ACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCT 622627
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|||||||| || || | || | |||||||||||| || | ||||| |||||
Sbjct 622628 AATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 622687
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| ||||| | ||| |||||| | ||| ||| | ||| || ||||
Sbjct 622688 ATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCGACTTCTAAGGTAATAGTTTTA 622747
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || || ||||| || |||||||||||
Sbjct 622748 CCAGTTAAAGTTTTAACGAAAATTTGCAT 622776
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || ||||| ||||||||||||||||| | || ||| ||| |||||
Sbjct 622796 ACCAAGTGCAAAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCT 622855
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211
|||||||| || ||| | || | ||||||||||||
Sbjct 622856 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATC 622890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379343306511750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |