Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq16 109 4e-19 seq5 102 6e-17 >seq16 Length=329187 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| ||| ||||||| Sbjct 297481 ACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 297422 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | |||||||||||| || | ||||| || || Sbjct 297421 AATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 297362 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||||| | ||| ||||| || ||| ||| | ||| || |||| Sbjct 297361 ATTTTAGATTTGACATTGTCAATGGTGTCGGAGGATTCGACTTCCAAGGTAATAGTTTTA 297302 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || || || || || || ||||||||||| ||||| Sbjct 297301 CCAGTTAAGGTCTTGACGAAAATTTGCATCTTTAA 297267 >seq5 Length=745199 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||||||||||||||||||||| | || ||| ||| ||||| Sbjct 622568 ACCAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCT 622627 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || || | || | |||||||||||| || | ||||| ||||| Sbjct 622628 AATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 622687 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||||| | ||| |||||| | ||| ||| | ||| || |||| Sbjct 622688 ATTTTGGATTTGACGTTATCAATGGTGTCAGAAGATTCGACTTCTAAGGTAATAGTTTTA 622747 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || ||||||||||| Sbjct 622748 CCAGTTAAAGTTTTAACGAAAATTTGCAT 622776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||||||||||||||| | || ||| ||| ||||| Sbjct 622796 ACCAAGTGCAAAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCT 622855 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||||||| || ||| | || | |||||||||||| Sbjct 622856 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATC 622890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343306511750