Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 163 3e-35 seq5 96.9 3e-15 seq16 95.1 1e-14 >seq1 Length=2377843 Score = 163 bits (180), Expect = 3e-35 Identities = 422/641 (66%), Gaps = 4/641 (1%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| | |||| || | ||| || ||||| | ||| ||||| || | ||| | Sbjct 1848578 TTCAACTCTCTTCATGAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTGGCTCT 1848637 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| ||| ||||||| | | ||| | |||||| || | || ||||| Sbjct 1848638 GATTTCTTCTTTACCGTGGTTCTTTCTAATATCGATAAAGTCAAAGATATCACTGTGCCA 1848697 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | ||| | ||||| || || |||||||| || || || ||||| || ||||| Sbjct 1848698 TGGTTCCAAGTATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACATAACG 1848757 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || ||||||||| | ||||| | ||| || | | ||||||||| | || || Sbjct 1848758 AGCAGTGTTGTTGAAAACTCTGACCATAGGAATAATACCGTTGGAAGTACCATTAGTACC 1848817 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | ||| | | |||| |||||| | ||| ||||| || || || | Sbjct 1848818 AGCAATGTAAGCACCAGTGGAACGAATGTTGTGGATGTGCAAACCAATACCACCAGCACT 1848877 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || || | || ||| ||||| ||| ||||| || || || ||| || || || Sbjct 1848878 CTTGGAAATTAAAGCACATGATTTCAAAGTATCGTAAATACCTTCAATGGAATCATCCTT 1848937 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | ||||||||| ||||||||||| | | | || ||| |||| ||||| Sbjct 1848938 CATAGCAAGCAAGAAACATGAAGACATTTGTGGTCTTGGGGTACCGGCATTGAACAAACA 1848997 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| |||| || || |||| | ||||| | ||| || || || || | Sbjct 1848998 TGGGGAACCGTGTGTGAAATATCTTTGTGACATCAAATTATAAGTTTCAATAACTCTTGG 1849057 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC--G 23878 ||| || | ||||| ||||| || || || | ||| || | | ||| ||||| || Sbjct 1849058 AATATCTTTACCGTGAATACCAATAGCAACTCTCATAATTAAATGTTGTGGTCTTTCAGC 1849117 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 | | | | ||||| || |||| |||||| | || ||| ||||| || ||||| ||| Sbjct 1849118 AACTTTA--CCGTTGATACGTAACAAATATGATCTTTCCATGGTTTTGAAACCAAAGTAG 1849175 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | || || || || | |||| || || || || ||||| Sbjct 1849176 TTGTAATTGAAATCTCTGTCGTAAACAATAGCTGAGTTCAA 1849216 Score = 145 bits (160), Expect = 7e-30 Identities = 419/641 (65%), Gaps = 13/641 (2%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || |||||| | || ||||| || ||| | | ||| |||||||| ||| |||||| Sbjct 1804835 GAAGAACCATTATTACAAGAAAACAAACGTCGTTATGTTATGTTTCCAATTAAATATCAT 1804776 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||||| | || ||||| || ||||| || || ||||| |||||||| || Sbjct 1804775 GAAATCTGGAATTTCTATAAAAAAGCCGAAGCCTCCTTCTGGACTTGTGAAGAAGTTGAT 1804716 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATT 57683 | ||| ||| || |||||| | | | || || ||| ||| ||||| || Sbjct 1804715 TTAAGTAAAGATTTGGATGATTGGAACAACAAATTAAATGACAATGAAAGATATTTTGTT 1804656 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 || || || |||||||| || || |||||||||||| || || ||| | ||| Sbjct 1804655 TCTAGAGTTTTAGCCTTTTTCGCTGCTTCTGATGGTATTGTTGGTGAAAACTTGATTGAA 1804596 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | ||||| ||||| ||| || | || || | || || || || || ||| | Sbjct 1804595 AACTTTTCTGCCGAAGTCCAACTGCCAGAAGCTAAATCATTCTATGGTTTCCAAATCATG 1804536 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || |||||| | ||||| ||||||||||| || | || || || || || || ||| | Sbjct 1804535 ATGGAAAACATTCATTCTGAAATGTATTCTTTATTAATTGAAACTTATGTTAAAGAC--C 1804478 Query 57864 GACGAGAAAC--GTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 || |||| | | |||| || || || |||| || || || ||||||| | Sbjct 1804477 CACAAGAAGCTGATTTCTTGTTTAATGCCATTGAAAACATTCCATGTATTACCAAGAAAG 1804418 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTT---CGCCGAGAGGCTAA 57978 | || ||| | ||||||||||| || | | | | || || || || | Sbjct 1804417 CTGAATGGGCCATCAAATGGATTCAA---GATAAAGATGCTTTATATGCTGAAAGATTGG 1804361 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || || | |||||||| ||||| || ||||| | || || ||| Sbjct 1804360 TTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGCTTCTATCTTCTGGT 1804301 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 |||| || | || ||||||| || |||| || ||| || ||||| | | || | Sbjct 1804300 TGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATTGATCTGTAGAGATG 1804241 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 | ||| | |||||||||||||| || | ||| ||| ||| Sbjct 1804240 AAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCAC 1804200 Score = 113 bits (124), Expect = 4e-20 Identities = 298/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||||| |||| ||||||| | || ||||| || |||||||| Sbjct 1847385 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCATAGAAATGCATACTTGTCAATTTA 1847444 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 || | | || | |||| | ||| || || ||| ||||| || || || || Sbjct 1847445 CCCATAGTTGGATCTTTAATGTGAATATTCAAAGATTGAGATTGATCAATGAAAGCAGCT 1847504 Query 22274 CGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 | ||| || ||||||| || | |||| | || |||||||| || |||||||||| Sbjct 1847505 CTATCAGCAGCCATATCAATGATATGTTTTTGT-GAAATTTCCCAAACAGTCTTGTACAA 1847563 Query 22333 TTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTATTGTGTATG 22390 | |||| || || || | || | | ||| |||| || || || ||| || Sbjct 1847564 AGCCTTGATTTCATCTGGGAT-GTTTGGCAAACCT-TGGATCGAACCATTGTTGGAAATA 1847621 Query 22391 ATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGA 22450 || | | || || | ||| ||||| | ||| | | |||||| || | || | Sbjct 1847622 ATGTTACTCTTCATAGCATCATTCCAAATACCCAAATCAACCAAATCCTTCAACAAGTAT 1847681 Query 22451 CGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 | || || | ||| || || || | ||| || | | |||||||||||| ||| | Sbjct 1847682 GGATTGACAATTTGGAATTCACCAGCCAAAACTCTTCTAGAGTAAATGTTGGAAGTGTAA 1847741 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 ||||||||| |||||||||| |||| || || | || ||||| || ||||| || || Sbjct 1847742 GGTTCGAAACATTCATTGTTACCCAAGATTTGTGAAGTAGAAGCAGTTGGCATTGGAGCA 1847801 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTT 22599 | || | ||||||||||| || || || Sbjct 1847802 ACCAACAAGGAGTTTCTCAAACCATGTTT 1847830 >seq5 Length=745199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| | || || ||||| || ||| | || || ||| | || Sbjct 622776 ATGCAAATTTTCGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAATCTTCT 622717 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| || || ||||| | || || || || Sbjct 622716 GACACCATTGATAACGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAA 622657 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || |||||||| ||||| || |||||| || || || || || ||| Sbjct 622656 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACCTTGTCTGACTACAAC 622597 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||||| ||| | || |||| | ||| |||| || ||| Sbjct 622596 ATTCAAAAAGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 622549 >seq16 Length=329187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 || ||| |||||||||||||| ||||| | || || ||||| || ||| | || || || Sbjct 297266 ATTAAAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGA 297325 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | | ||||||| | || | |||||| | ||| ||||| ||||| | || || Sbjct 297326 ATCCTCCGACACCATTGACAATGTCAAATCTAAAATCCAAGACAAAGAAGGTATTCCACC 297385 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 || || || | | || || ||||| ||||| |||||||| || ||| || || Sbjct 297386 AGATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGA 297445 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| ||||| || | || |||| | ||| |||| || ||| Sbjct 297446 CTACAACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGT 297500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765564188000