Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01] 150 sequences; 15,326,821 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 >seq1 Length=2377843 Score = 170 bits (188), Expect = 4e-37 Identities = 306/443 (69%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| |||||||| ||||||| || ||||| |||||| |||| || || || |||||| Sbjct 1804361 GTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGCTTCTATCTTCTGG 1804302 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| | |||| ||| | || | ||||||||| || || | ||| || Sbjct 1804301 TTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATTGATCTGTAGAGAT 1804242 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | ||| || ||||| || || |||| | || | | ||| Sbjct 1804241 GAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCAC---TTGCAACACAGACCA 1804185 Query 102098 TCAAGAGAAAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || ||||| || |||||| || | |||||| || ||||| |||||| | Sbjct 1804184 TCTCCAGAAA---TTGTTGAAAAGATTATTGTTGAAGCTGTTGATGTTGAAAAAGAATAT 1804128 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 |||| | | | || || ||| ||| |||| |||||||| | |||||| | || || Sbjct 1804127 TTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACTGTGACTTGATGTGTCAATAT 1804068 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272 |||||| ||| || |||| | |||| ||| |||| || ||||| || |||| Sbjct 1804067 GTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGGTAACAAGAAAGTT--TACAATG 1804010 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||| ||||| ||| |||||||| ||||||||| | | ||| ||||||||||| | Sbjct 1804009 TTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGGCTGGTAAAACCAACTTTTTCG 1803950 Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||| | || || ||| Sbjct 1803949 AAAAGAGAGTTTCTGATTACCAA 1803927 Score = 136 bits (150), Expect = 8e-27 Identities = 351/525 (67%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 101857 GAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACT 101913 ||| ||| || | |||||||||| ||||| ||| | | | | ||| || ||| Sbjct 1025227 GAAAAAGCAG-ATTGGGCTATTAGATGGATTCAAGACGAAGAAGCCTTGTTTGCAGAAAG 1025285 Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 | | || || |||||||| ||||||| || ||||| ||||| ||||||| |||||||| Sbjct 1025286 ATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCATTCGCTTCCATTTT 1025345 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 |||| | || || || || | |||| ||| | || | ||| ||||| || || | ||| Sbjct 1025346 CTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATCTGTAG 1025405 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA- 102092 |||||||||| |||| ||| | ||| || | || || | | || | ||| Sbjct 1025406 GGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA---CTTGGAGAATAA 1025462 Query 102093 -CCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 || ||| ||| | ||| ||| |||||||||| || | |||||| || Sbjct 1025463 GCCGGATC-----CTTCCATTATAGAAAAGATTATCACTGAAGCTGTTAGTATTGAA-AA 1025516 Query 102149 GAATTTC-TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 ||| | | ||| | | | || || ||| || |||| ||||| || | |||||| | Sbjct 1025517 GAAGTACTTCAGTGATGCGCTTCCAGTTTCTTTGTTGGGTATGAATTGTGATTTGATGTG 1025576 Query 102208 CCAGTACATTGAAT-TTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 || || | |||| |||| || |||| | | ||||||| | || || ||| | | Sbjct 1025577 TCAATATGTGGAATATTGT-GCCGATAGATTGTTGGTTGCTTTTGGTAATGATAAGTATT 1025635 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 |||| || || || || || |||||||| ||||| ||| | | ||| ||||| | Sbjct 1025636 ATAACGTGACTAATCCATTTGATTTCATGGAAAATATATCCTTGGCCGGTAAAACCAATT 1025695 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGG 102371 | |||||||||||||| | || || ||| | || ||||||| Sbjct 1025696 TCTTTGAAAAGAGAGTGTCTGATTACCAAAGAGCTGGTGTCATGG 1025740 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || || ||||||||||| || || || ||||||||| | || ||||||||||||||| | Sbjct 1090745 GAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAA 1090686 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| | | |||||||||||| | ||| |||||| ||| |||| | |||| Sbjct 1090685 GATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGAAA 1090626 Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572 | | || ||| |||||||||| || || |||| || |||||||| ||| || Sbjct 1090625 TTAAAGTCCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTTT 1090566 Query 35573 CACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | |||||| | |||||||| || | | |||||| ||||| Sbjct 1090565 GATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGT 1090519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582098143250