Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20tropicalis_20[genbank_20GCA_5F000633855.1_202014-05-01]
150 sequences; 15,326,821 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1 170 4e-37
>seq1
Length=2377843
Score = 170 bits (188), Expect = 4e-37
Identities = 306/443 (69%), Gaps = 13/443 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||| |||||||| ||||||| || ||||| |||||| |||| || || || ||||||
Sbjct 1804361 GTTGCTTTTGCTGCTATTGAAGGTATTTTCTTCAGTGGTTCATTTGCTTCTATCTTCTGG 1804302
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| || || || ||| | |||| ||| | || | ||||||||| || || | ||| ||
Sbjct 1804301 TTGAAAAAGAGAGGTTTGATGCCAGGTTTGACTTTCTCCAATGAATTGATCTGTAGAGAT 1804242
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|||||| | ||| || ||||| || || |||| | || | | |||
Sbjct 1804241 GAAGGTTTACATACTGATTTTGCTTGTTTGTTGTTCTCCCAC---TTGCAACACAGACCA 1804185
Query 102098 TCAAGAGAAAGGATTCTTGAAA---TTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
|| ||||| || |||||| || | |||||| || ||||| |||||| |
Sbjct 1804184 TCTCCAGAAA---TTGTTGAAAAGATTATTGTTGAAGCTGTTGATGTTGAAAAAGAATAT 1804128
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
|||| | | | || || ||| ||| |||| |||||||| | |||||| | || ||
Sbjct 1804127 TTCACTGATGCTCTTCCAGTTTCTTTATTGGGTATGAACTGTGACTTGATGTGTCAATAT 1804068
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATG 102272
|||||| ||| || |||| | |||| ||| |||| || ||||| || ||||
Sbjct 1804067 GTTGAATATGTTGCTGATAGATTATTATTTGCCTTGGGTAACAAGAAAGTT--TACAATG 1804010
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|||| ||||| ||| |||||||| ||||||||| | | ||| ||||||||||| |
Sbjct 1804009 TTACTAACCCATTCGATTTCATGGAAAATATTTCCTTGGCTGGTAAAACCAACTTTTTCG 1803950
Query 102333 AAAAGAGAGTCGCCGAGTATCAA 102355
|||||||||| | || || |||
Sbjct 1803949 AAAAGAGAGTTTCTGATTACCAA 1803927
Score = 136 bits (150), Expect = 8e-27
Identities = 351/525 (67%), Gaps = 21/525 (4%)
Strand=Plus/Plus
Query 101857 GAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACT 101913
||| ||| || | |||||||||| ||||| ||| | | | | ||| || |||
Sbjct 1025227 GAAAAAGCAG-ATTGGGCTATTAGATGGATTCAAGACGAAGAAGCCTTGTTTGCAGAAAG 1025285
Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973
| | || || |||||||| ||||||| || ||||| ||||| ||||||| ||||||||
Sbjct 1025286 ATTGGTGGCATTTGCTGCTATTGAAGGCATTTTCTTCAGTGGGTCATTCGCTTCCATTTT 1025345
Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033
|||| | || || || || | |||| ||| | || | ||| ||||| || || | |||
Sbjct 1025346 CTGGTTGAAAAAAAGAGGGTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATCTGTAG 1025405
Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA- 102092
|||||||||| |||| ||| | ||| || | || || | | || | |||
Sbjct 1025406 GGACGAAGGTATTCACACCGATTATGCTTGTTTACTATTTTCATA---CTTGGAGAATAA 1025462
Query 102093 -CCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAA 102148
|| ||| ||| | ||| ||| |||||||||| || | |||||| ||
Sbjct 1025463 GCCGGATC-----CTTCCATTATAGAAAAGATTATCACTGAAGCTGTTAGTATTGAA-AA 1025516
Query 102149 GAATTTC-TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207
||| | | ||| | | | || || ||| || |||| ||||| || | |||||| |
Sbjct 1025517 GAAGTACTTCAGTGATGCGCTTCCAGTTTCTTTGTTGGGTATGAATTGTGATTTGATGTG 1025576
Query 102208 CCAGTACATTGAAT-TTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266
|| || | |||| |||| || |||| | | ||||||| | || || ||| | |
Sbjct 1025577 TCAATATGTGGAATATTGT-GCCGATAGATTGTTGGTTGCTTTTGGTAATGATAAGTATT 1025635
Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326
|||| || || || || || |||||||| ||||| ||| | | ||| ||||| |
Sbjct 1025636 ATAACGTGACTAATCCATTTGATTTCATGGAAAATATATCCTTGGCCGGTAAAACCAATT 1025695
Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGG 102371
| |||||||||||||| | || || ||| | || |||||||
Sbjct 1025696 TCTTTGAAAAGAGAGTGTCTGATTACCAAAGAGCTGGTGTCATGG 1025740
Score = 104 bits (114), Expect = 5e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452
|| || ||||||||||| || || || ||||||||| | || ||||||||||||||| |
Sbjct 1090745 GAAGGTGATTTGGGACCAGTTTATGGTTTCCAATGGAGACACTTTGGTGCTGAATATAAA 1090686
Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512
||| | | |||||||||||| | ||| |||||| ||| |||| | ||||
Sbjct 1090685 GATTGTGATGCTGATTATACTGGACAAGGTTATGATCAGTTGCAAGATATCATTAAGAAA 1090626
Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572
| | || ||| |||||||||| || || |||| || |||||||| ||| ||
Sbjct 1090625 TTAAAGTCCAACCCATATGATAGAAGAATAATCATGAGTGCCTGGAATCCACCAGATTTT 1090566
Query 35573 CACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
| |||||| | |||||||| || | | |||||| |||||
Sbjct 1090565 GATAAAATGGCTTTACCTCCATGTCATGTCTTTTGTCAATTCTATGT 1090519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989582098143250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |